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Muffin automatically checks environment variables during its initialization. These environment variables are meant as debug tools or overrides for default behaviours:
| MUFFIN_VERBOSE | Enable verbose mode, in which more information is printed to the console. Muffin needs to be built with the --enable-verbose-mode option (enabled by default). For more fine-grained control of the output, see  | 
| MUFFIN_DEBUG | Traps and prints X errors to the console. | 
| MUFFIN_G_FATAL_WARNINGS | Causes any logging from the domains Muffin, Gtk, Gdk, Pango or GLib to terminate the process (only when using the log functions in GLib). | 
| MUFFIN_USE_LOGFILE | Log all messages to a temporary file. | 
| MUFFIN_DEBUG_XINERAMA | Log extra information about support of the XINERAMA extension. | 
| MUFFIN_DEBUG_SM | Log extra information about session management. | 
| MUFFIN_DEBUG_BUTTON_GRABS | Log extra information about button grabs. | 
| MUFFIN_SYNC | Call XSync after each X call. | 
| MUFFIN_DISPLAY | Name of the X11 display to use. | 
| META_DISABLE_MIPMAPS | Disable use of mipmaps for the textures that back window pixmaps. | 
| MUFFIN_USE_STATIC_GRAVITY | Enable support for clients with static bit-gravity. | 
| MUFFIN_WM_CLASS_FILTER | Comma-separated list of WM_CLASS names to which to restrict Muffin to. | 
| MUFFIN_DISABLE_FALLBACK_COLOR | Disable fallback for themed colors, for easier detection of typographical errors. |