(function(E,F,G,H,m,I,r,n,s,t,u,j,K,B,L,C,x,A,v,z,w,M,N,O,P,Q,D,R,S,T,y,U,V,W,X,Y,Z,$,aa,ba,ca,da,ea,fa,ga,ha,ia,ja,ka,la,ma,na,oa,pa,qa,ra,sa,ta,f,h){r("JM");s(null,"JM.Text","java.lang.Float JU.PT J.shape.Shape JU.C $.Font $.Txt JV.JC".split(" "),function(){c$=u(function(){this.vwr=null;this.doFormatText=!1;this.font=null;this.boxYoff2=this.offsetY=this.offsetX=this.lineHeight=this.descent=this.ascent=this.fid=0;this.widths=null;this.textHeight=this.textWidth=0;this.image=this.lines=this.textUnformatted=
this.text=null;this.imageScale=1;this.y0=this.yAdj=this.xAdj=0;this.pointerPt=null;this.isEcho=this.isMeasure=!1;this.script=this.target=this.xyz=null;this.atomY=this.atomX=this.valign=this.align=this.fontScale=this.pointer=this.bgcolix=this.colix=0;this.atomZ=2147483647;this.movableZ=this.movableY=this.movableX=0;this.movableZPercent=this.movableYPercent=this.movableXPercent=2147483647;this.z=1;this.zSlab=-2147483648;this.pymolOffset=null;this.windowHeight=this.windowWidth=0;this.adjustForWindow=
!1;this.boxY=this.boxX=this.boxHeight=this.boxWidth=0;this.modelIndex=-1;this.visible=!0;this.hidden=!1;this.boxXY=null;this.scalePixelsPerMicron=0;t(this,arguments)},JM,"Text");B(c$,function(){this.boxXY=v(5,0)});c$.newLabel=f(c$,"newLabel",function(a,b,c,d,e,g,f){var k=new JM.Text;k.vwr=a;k.set(b,d,g,f);k.setText(c);k.bgcolix=e;return k},"JV.Viewer,JU.Font,~S,~N,~N,~N,~N");c$.newMeasure=f(c$,"newMeasure",function(a,b,c){var d=new JM.Text;d.vwr=a;d.set(b,c,0,0);d.isMeasure=!0;return d},"JV.Viewer,JU.Font,~N");
c$.newEcho=f(c$,"newEcho",function(a,b,c,d,e,g,f){var k=new JM.Text;k.isEcho=!0;k.vwr=a;k.set(b,d,g,f);k.target=c;k.valign=e;k.z=2;k.zSlab=-2147483648;return k},"JV.Viewer,JU.Font,~S,~N,~N,~N,~N");f(c$,"set",function(a,b,c,d){this.scalePixelsPerMicron=d;this.isEcho=this.isEcho;this.colix=b;this.align=c;this.setFont(a,!this.isEcho)},"JU.Font,~N,~N,~N");f(c$,"setOffset",function(a){this.offsetX=JV.JC.getXOffset(a);this.offsetY=JV.JC.getYOffset(a);this.pymolOffset=null;this.valign=3},"~N");f(c$,"getFontMetrics",
function(){this.descent=this.font.getDescent();this.ascent=this.font.getAscent();this.lineHeight=this.ascent+this.descent});f(c$,"setFontFromFid",function(a){this.fid!=a&&(this.fontScale=0,this.setFont(JU.Font.getFont3D(a),!0))},"~N");f(c$,"setText",function(a){null!=this.image&&this.getFontMetrics();this.image=null;null!=a&&0==a.length&&(a=null);null!=this.text&&this.text.equals(a)||(this.text=this.textUnformatted=a,(this.doFormatText=this.isEcho&&null!=a&&(0<=a.indexOf("%{")||0<=a.indexOf("@{")))||
this.recalc())},"~S");f(c$,"setImage",function(a){this.image=a;this.recalc()},"~O");f(c$,"setScale",function(a){this.imageScale=a;this.recalc()},"~N");f(c$,"setFont",function(a,b){this.font=a;null!=this.font&&(this.getFontMetrics(),b&&(this.fid=this.font.fid,this.recalc()))},"JU.Font,~B");f(c$,"setFontScale",function(a){this.fontScale!=a&&(this.fontScale=a,0!=this.fontScale&&this.setFont(this.vwr.gdata.getFont3DScaled(this.font,a),!0))},"~N");f(c$,"recalc",function(){if(null!=this.image)this.textWidth=
this.textHeight=0,this.boxWidth=this.vwr.apiPlatform.getImageWidth(this.image)*this.fontScale*this.imageScale,this.boxHeight=this.vwr.apiPlatform.getImageHeight(this.image)*this.fontScale*this.imageScale,this.ascent=0;else if(null==this.text)this.widths=this.lines=this.text=null;else if(null!=this.font){this.lines=JU.PT.split(this.text,0<=this.text.indexOf("\n")?"\n":"|");this.textWidth=0;this.widths=x(this.lines.length,0);for(var a=this.lines.length;0<=--a;)this.textWidth=Math.max(this.textWidth,
this.widths[a]=this.stringWidth(this.lines[a]));this.textHeight=this.lines.length*this.lineHeight;this.boxWidth=this.textWidth+(2<=this.fontScale?16:8);this.boxHeight=this.textHeight+(2<=this.fontScale?16:8)}});f(c$,"setPosition",function(a,b,c,d){null==d?d=this.boxXY:this.boxXY=d;this.setWindow(this.vwr.gdata.width,this.vwr.gdata.height,a);0!=a&&0!=this.scalePixelsPerMicron?this.setFontScale(a/this.scalePixelsPerMicron):this.fontScale!=b&&this.setFontScale(b);this.doFormatText&&(this.text=this.isEcho?
JU.Txt.formatText(this.vwr,this.textUnformatted):this.textUnformatted,this.recalc());a=this.offsetX*b;b*=this.offsetY;this.xAdj=2<=this.fontScale?8:4;this.yAdj=this.ascent-this.lineHeight+this.xAdj;if(!this.isEcho||null!=this.pymolOffset){d[0]=this.movableX;d[1]=this.movableY;null!=this.pymolOffset&&2!=this.pymolOffset[0]&&3!=this.pymolOffset[0]?(c=this.vwr.tm.scaleToScreen(this.z,1E3),a=this.pymolOffset[3],a=(0>a?-1:1)*Math.max(0==a?0.5:0,Math.abs(a)-1)*c,this.z-=j(a),c=this.vwr.tm.scaleToScreen(this.z,
1E3),a=this.getPymolXYOffset(this.pymolOffset[1],this.textWidth,c),b=this.ascent-this.descent,b=-this.getPymolXYOffset(-this.pymolOffset[2],b,c)-m((this.textHeight+b)/2),1==this.pymolOffset[0]&&(b-=this.descent),this.xAdj=2<=this.fontScale?8:4,this.yAdj=-this.descent,d[0]=this.movableX-this.xAdj,d[1]=this.movableY-this.yAdj,c=!0,this.boxYoff2=-2):this.boxYoff2=0;if(null==this.pymolOffset)switch(this.align){case 8:a=b=0;break;case 12:d[0]-=this.boxWidth;case 4:b=0}JM.Text.setBoxXY(this.boxWidth,this.boxHeight,
a,b,d,c)}else this.setPos(this.fontScale);this.boxX=d[0];this.boxY=d[1];this.adjustForWindow&&this.setBoxOffsetsInWindow(0,this.isEcho?0:16*this.fontScale+this.lineHeight,this.boxY-this.textHeight);this.y0=this.boxY+this.yAdj;this.isMeasure&&8!=this.align&&(this.y0+=this.ascent+(this.lines.length-1)/2*this.lineHeight)},"~N,~N,~B,~A");f(c$,"getPymolXYOffset",function(a,b,c){var d=-1>a?-1:1<a?0:(a-1)/2;return d*b+(-1>a||1<a?a+(0>a?1:-1):0)*c},"~N,~N,~N");f(c$,"setPos",function(a){var b,c,d,e=null!=
this.xyz;3==this.valign||4==this.valign?b=d=c=(2147483647!=this.movableXPercent?m(this.movableXPercent*this.windowWidth/100):e?this.movableX:this.movableX*a)+this.offsetX*a:(b=5*a,c=m(this.windowWidth/2),d=this.windowWidth-b);this.boxXY[0]=b;switch(this.align){case 8:this.boxXY[0]=c-this.boxWidth/2;break;case 12:this.boxXY[0]=d-this.boxWidth}this.boxXY[1]=0;switch(this.valign){case 0:break;case 2:this.boxXY[1]=m(this.windowHeight/2);break;case 1:this.boxXY[1]=this.windowHeight;break;default:b=2147483647!=
this.movableYPercent?m(this.movableYPercent*this.windowHeight/100):e?this.movableY:this.movableY*a,this.boxXY[1]=(e?b:this.windowHeight-b)+this.offsetY*a}8==this.align?this.boxXY[1]-=(null!=this.image?this.boxHeight:null!=this.xyz?this.boxHeight:this.ascent-this.boxHeight)/2:null!=this.image?this.boxXY[1]-=0:null!=this.xyz&&(this.boxXY[1]-=m(this.ascent/2))},"~N");c$.setBoxXY=f(c$,"setBoxXY",function(a,b,c,d,e,g){var f;0<c||g?f=c:(f=-a,f=0==c?f/2:f+c);e[0]+=f;e[1]+=g||0<d?-b-d:0==d?-b/2:-d;e[2]=a;
e[3]=b},"~N,~N,~N,~N,~A,~B");f(c$,"stringWidth",function(a){var b=0,c=1;if(null==a)return 0;if(0>a.indexOf("<su")&&0>a.indexOf("<color"))return this.font.stringWidth(a);for(var d=a.length,e,g=0;g<d;g++){if("<"==a.charAt(g)){if(g+8<=d&&(a.substring(g,g+7).equals("<color ")||a.substring(g,g+8).equals("</color>"))){var f=a.indexOf(">",g);if(0<=f){g=f;continue}}if(g+5<=d&&((e=a.substring(g,g+5)).equals("<sub>")||e.equals("<sup>"))){g+=4;c=1;continue}if(g+6<=d&&((e=a.substring(g,g+6)).equals("</sub>")||
e.equals("</sup>"))){g+=5;c=1;continue}}b+=this.font.stringWidth(a.substring(g,g+1))*c}return b},"~S");f(c$,"setXYA",function(a,b){if(0==b){a[2]=this.boxX;switch(this.align){case 8:a[2]+=this.boxWidth/2;break;case 12:a[2]+=this.boxWidth-this.xAdj;break;default:a[2]+=this.xAdj}a[0]=a[2];a[1]=this.y0}switch(this.align){case 8:a[0]=a[2]-m(this.widths[b]/2);break;case 12:a[0]=a[2]-this.widths[b]}a[1]+=this.lineHeight},"~A,~N");f(c$,"appendFontCmd",function(a){a.append("  "+J.shape.Shape.getFontCommand("echo",
this.font));0<this.scalePixelsPerMicron&&a.append(" "+1E4/this.scalePixelsPerMicron)},"JU.SB");f(c$,"setScalePixelsPerMicron",function(a){this.fontScale=0;this.scalePixelsPerMicron=a},"~N");f(c$,"setXYZ",function(a,b){this.xyz=a;null==a&&(this.zSlab=-2147483648);b&&(this.valign=null==a?3:4,this.adjustForWindow=null==a)},"JU.P3,~B");f(c$,"setTranslucent",function(a,b){b?0!=this.bgcolix&&(this.bgcolix=JU.C.getColixTranslucent3(this.bgcolix,!Float.isNaN(a),a)):this.colix=JU.C.getColixTranslucent3(this.colix,
!Float.isNaN(a),a)},"~N,~B");f(c$,"setMovableX",function(a){this.valign=4==this.valign?4:3;this.movableX=a;this.movableXPercent=2147483647},"~N");f(c$,"setMovableY",function(a){this.valign=4==this.valign?4:3;this.movableY=a;this.movableYPercent=2147483647},"~N");f(c$,"setMovableXPercent",function(a){this.valign=4==this.valign?4:3;this.movableX=2147483647;this.movableXPercent=a},"~N");f(c$,"setMovableYPercent",function(a){this.valign=4==this.valign?4:3;this.movableY=2147483647;this.movableYPercent=
a},"~N");f(c$,"setMovableZPercent",function(a){4!=this.valign&&(this.valign=3);this.movableZ=2147483647;this.movableZPercent=a},"~N");f(c$,"setZs",function(a,b){this.z=a;this.zSlab=b},"~N,~N");f(c$,"setXYZs",function(a,b,c,d){this.setMovableX(a);this.setMovableY(b);this.setZs(c,d)},"~N,~N,~N,~N");f(c$,"setScript",function(a){this.script=null==a||0==a.length?null:a},"~S");f(c$,"setAlignmentLCR",function(a){return"left".equals(a)?this.setAlignment(4):"center".equals(a)?this.setAlignment(8):"right".equals(a)?
this.setAlignment(12):!1},"~S");f(c$,"setAlignment",function(a){this.align!=a&&(this.align=a,this.recalc());return!0},"~N");f(c$,"setBoxOffsetsInWindow",function(a,b,c){var d=this.boxWidth+a,e=this.boxX;e+d>this.windowWidth&&(e=this.windowWidth-d);e<a&&(e=a);this.boxX=e;a=this.boxHeight;c+a>this.windowHeight&&(c=this.windowHeight-a);c<b&&(c=b);this.boxY=c},"~N,~N,~N");f(c$,"setWindow",function(a,b,c){this.windowWidth=a;this.windowHeight=b;null==this.pymolOffset&&(0>this.scalePixelsPerMicron&&0!=c)&&
this.setScalePixelsPerMicron(c)},"~N,~N,~N");f(c$,"checkObjectClicked",function(a,b,c,d){if(this.hidden||null==this.script||0<=this.modelIndex&&!d.get(this.modelIndex))return!1;a&&(b<<=1,c<<=1);return b>=this.boxX&&b<=this.boxX+this.boxWidth&&c>=this.boxY&&c<=this.boxY+this.boxHeight},"~B,~N,~N,JU.BS");f(c$,"getPymolScreenOffset",function(a,b,c,d,e){var g=this.pymolOffset[0];null!=a&&1==Math.abs(g)%2?d.setT(a):d.set(0,0,0);d.add3(this.pymolOffset[4],this.pymolOffset[5],this.pymolOffset[6]);this.vwr.tm.transformPtScr(d,
b);if(2==g||3==g)b.x+=this.pymolOffset[1],b.y+=this.pymolOffset[2],b.z+=this.pymolOffset[3];this.setXYZs(b.x,b.y,b.z,c);this.setScalePixelsPerMicron(e)},"JU.P3,JU.P3i,~N,JU.P3,~N")});r("J.shape");s(["J.shape.Shape","java.util.Hashtable"],"J.shape.TextShape",["JU.P3","$.PT","JU.C","$.Logger"],function(){c$=u(function(){this.currentBgColor=this.currentColor=this.currentFont=this.currentObject=this.objects=null;this.currentBgTranslucentLevel=this.currentTranslucentLevel=0;this.thisID=null;this.isAll=
this.isHover=!1;t(this,arguments)},J.shape,"TextShape",J.shape.Shape);w(c$,function(){this.objects=new java.util.Hashtable});f(c$,"setPropTS",function(a,b,c){if("text"===a)if(a=b,null!=this.currentObject)this.currentObject.setText(a);else{if(this.isAll){var d;for(c=this.objects.values().iterator();c.hasNext()&&((d=c.next())||1);)d.setText(a)}}else if("font"===a)if(this.currentFont=b,null!=this.currentObject)this.currentObject.setFont(this.currentFont,!0),this.currentObject.setFontScale(0);else{if(this.isAll)for(c=
this.objects.values().iterator();c.hasNext()&&((d=c.next())||1);)d.setFont(this.currentFont,!0)}else if("allOff"===a)this.currentObject=null,this.isAll=!0,this.objects=new java.util.Hashtable;else if("delete"===a)if(null!=this.currentObject)this.objects.remove(this.currentObject.target),this.currentObject=null;else{if(this.isAll||null!=this.thisID)for(c=this.objects.values().iterator();c.hasNext();)a=c.next(),(this.isAll||JU.PT.isMatch(a.target.toUpperCase(),this.thisID,!0,!0))&&c.remove()}else if("off"===
a)this.isAll&&(this.objects=new java.util.Hashtable,this.isAll=!1,this.currentObject=null),null!=this.currentObject&&(this.objects.remove(this.currentObject.target),this.currentObject=null);else if("model"===a)if(b=b.intValue(),null!=this.currentObject)this.currentObject.modelIndex=b;else{if(this.isAll)for(c=this.objects.values().iterator();c.hasNext()&&((d=c.next())||1);)d.modelIndex=b}else if("align"===a)if(null!=this.currentObject)this.currentObject.setAlignmentLCR(b)||JU.Logger.error("unrecognized align:"+
b);else{if(this.isAll){var e;for(d=this.objects.values().iterator();d.hasNext()&&((e=d.next())||1);)e.setAlignmentLCR(b)}}else if("bgcolor"===a)if(this.currentBgColor=b,null!=this.currentObject)this.currentObject.bgcolix=JU.C.getColixO(b);else{if(this.isAll)for(c=this.objects.values().iterator();c.hasNext();)c.next().bgcolix=JU.C.getColixO(b)}else if("color"===a)if(this.currentColor=b,null!=this.currentObject)this.currentObject.colix=JU.C.getColixO(b);else{if(this.isAll||null!=this.thisID)for(c=this.objects.values().iterator();c.hasNext();)if(a=
c.next(),this.isAll||JU.PT.isMatch(a.target.toUpperCase(),this.thisID,!0,!0))a.colix=JU.C.getColixO(b)}else if("target"===a){if((this.isAll=b.equals("all"))||b.equals("none"))this.currentObject=null}else if((d="bgtranslucency"===a)||"translucency"===a)if(b="translucent"===b,d?this.currentBgTranslucentLevel=b?this.translucentLevel:0:this.currentTranslucentLevel=b?this.translucentLevel:0,null!=this.currentObject)this.currentObject.setTranslucent(this.translucentLevel,d);else{if(this.isAll)for(c=this.objects.values().iterator();c.hasNext();)c.next().setTranslucent(this.translucentLevel,
d)}else if("deleteModelAtoms"===a){b=b[2][0];for(c=this.objects.values().iterator();c.hasNext();)a=c.next(),a.modelIndex==b?c.remove():a.modelIndex>b&&a.modelIndex--}else this.setPropS(a,b,c)},"~S,~O,JU.BS");h(c$,"getShapeState",function(){return null});h(c$,"initModelSet",function(){this.currentObject=null;this.isAll=!1});h(c$,"setModelVisibilityFlags",function(a){if(!this.isHover)for(var b,c=this.objects.values().iterator();c.hasNext()&&((b=c.next())||1);)b.visible=0>b.modelIndex||a.get(b.modelIndex)},
"JU.BS");h(c$,"checkObjectClicked",function(a,b,c,d){if(this.isHover||0==c)return null;c=this.vwr.antialiased;for(var e,g=this.objects.values().iterator();g.hasNext()&&((e=g.next())||1);)if(e.checkObjectClicked(c,a,b,d))return null!=e.script&&this.vwr.evalStringQuiet(e.script),a=new java.util.Hashtable,a.put("pt",null==e.xyz?new JU.P3:e.xyz),b=e.modelIndex,0>b&&(b=0),a.put("modelIndex",Integer.$valueOf(b)),a.put("model",this.vwr.getModelNumberDotted(b)),a.put("id",e.target),a.put("type","echo"),a;
return null},"~N,~N,~N,JU.BS,~B");h(c$,"checkObjectHovered",function(a,b,c){if(this.isHover)return!1;for(var d=!1,e=this.vwr.antialiased,g,f=this.objects.values().iterator();f.hasNext()&&((g=f.next())||1);)if(null!=g.script&&(d=!0,g.checkObjectClicked(e,a,b,c)))return this.vwr.setCursor(12),!0;d&&this.vwr.setCursor(0);return!1},"~N,~N,JU.BS")});r("J.shape");s(["J.shape.AtomShape","java.util.Hashtable","JU.P3"],"J.shape.Labels","JU.AU $.BS $.Lst $.PT J.c.PAL JM.LabelToken $.Text JS.SV JU.BSUtil $.C $.Font JV.JC".split(" "),
function(){c$=u(function(){this.bsBgColixSet=this.bsFontSet=this.labelBoxes=this.atomLabels=this.offsets=this.fids=this.bgcolixes=this.formats=this.strings=null;this.zeroFontId=this.defaultPointer=this.defaultPaletteID=this.defaultBgcolix=this.defaultColix=this.defaultFontId=this.defaultZPos=this.defaultAlignment=this.defaultOffset=0;this.defaultsOnlyForNone=!0;this.isScaled=this.setDefaults=!1;this.scalePixelsPerMicron=0;this.ptTemp=null;this.lastPicked=this.pickedAtom=-1;this.pickedY=this.pickedX=
this.pickedOffset=0;t(this,arguments)},J.shape,"Labels",J.shape.AtomShape);w(c$,function(){this.atomLabels=new java.util.Hashtable;this.ptTemp=new JU.P3});h(c$,"initShape",function(){this.defaultFontId=this.zeroFontId=this.vwr.gdata.getFont3DFSS("SansSerif","Plain",13).fid;this.defaultBgcolix=this.defaultColix=0;this.defaultOffset=JV.JC.LABEL_DEFAULT_OFFSET;this.defaultAlignment=4;this.defaultZPos=this.defaultPointer=0;this.translucentAllowed=!1});h(c$,"setProperty",function(a,b,c){this.isActive=
!0;if("setDefaults"===a)this.setDefaults=b.booleanValue();else if("color"===a){var d=J.c.PAL.pidOf(b);b=JU.C.getColixO(b);if(!this.setDefaults){var e=this.checkColixLength(b,c.length());for(a=c.nextSetBit(0);0<=a&&a<e;a=c.nextSetBit(a+1))this.setLabelColix(a,b,d)}if(this.setDefaults||!this.defaultsOnlyForNone)this.defaultColix=b,this.defaultPaletteID=d}else if("scalereference"===a){if(null!=this.strings){a=b.floatValue();d=0==a?0:1E4/a;e=Math.min(this.ac,this.strings.length);for(a=c.nextSetBit(0);0<=
a&&a<e;a=c.nextSetBit(a+1))b=this.getLabel(a),null==b?(b=JM.Text.newLabel(this.vwr,null,this.strings[a],0,0,0,d),this.putLabel(a,b)):b.setScalePixelsPerMicron(d)}}else if("label"===a){var g=this.isPickingMode()&&1==c.cardinality()&&c.nextSetBit(0)==this.lastPicked;this.setScaling();var d=null,f=this.checkStringLength(c.length());(0!=this.defaultColix||0!=this.defaultPaletteID)&&this.checkColixLength(this.defaultColix,c.length());0!=this.defaultBgcolix&&this.checkBgColixLength(this.defaultBgcolix,
c.length());if(n(b,JU.Lst)){var e=b.size(),d=y(-1,[null]),k=0;for(a=c.nextSetBit(0);0<=a&&a<f;a=c.nextSetBit(a+1))k>=e?this.setLabel(J.shape.Labels.nullToken,"",a,!g):(d[0]=null,this.setLabel(d,JS.SV.sValue(b.get(k++)),a,!g))}else{d=null==b||0==b.length?J.shape.Labels.nullToken:y(-1,[null]);for(a=c.nextSetBit(0);0<=a&&a<this.ac;a=c.nextSetBit(a+1))this.setLabel(d,b,a,!g)}}else if(a.startsWith("label:"))this.setScaling(),this.checkStringLength(this.ac),c=a.substring(6),0==c.length&&(c=null),this.setLabel(y(-1,
[null]),c,b.intValue(),!1);else if("clearBoxes"===a)this.labelBoxes=null;else if(!("translucency"===a||"bgtranslucency"===a))if("bgcolor"===a){this.isActive=!0;null==this.bsBgColixSet&&(this.bsBgColixSet=JU.BS.newN(this.ac));d=JU.C.getColixO(b);if(!this.setDefaults){e=this.checkBgColixLength(d,c.length());for(a=c.nextSetBit(0);0<=a&&a<e;a=c.nextSetBit(a+1))this.setBgcolix(a,d)}if(this.setDefaults||!this.defaultsOnlyForNone)this.defaultBgcolix=d}else if(null==this.bsFontSet&&(this.bsFontSet=JU.BS.newN(this.ac)),
"fontsize"===a)if(a=b.intValue(),0>a)this.fids=null;else{d=this.vwr.gdata.getFontFid(a);if(!this.setDefaults)for(a=c.nextSetBit(0);0<=a&&a<this.ac;a=c.nextSetBit(a+1))this.setFont(a,d);if(this.setDefaults||!this.defaultsOnlyForNone)this.defaultFontId=d}else if("font"===a){d=b.fid;if(!this.setDefaults)for(a=c.nextSetBit(0);0<=a&&a<this.ac;a=c.nextSetBit(a+1))this.setFont(a,d);if(this.setDefaults||!this.defaultsOnlyForNone)this.defaultFontId=d}else if("offset"===a)if(n(b,Integer)){d=b.intValue();if(!this.setDefaults)for(a=
c.nextSetBit(0);0<=a&&a<this.ac;a=c.nextSetBit(a+1))this.setOffsets(a,d);if(this.setDefaults||!this.defaultsOnlyForNone)this.defaultOffset=d}else{if(!this.setDefaults){this.checkColixLength(-1,this.ac);for(a=c.nextSetBit(0);0<=a&&a<this.ac;a=c.nextSetBit(a+1))this.setPymolOffset(a,b)}}else if("align"===a){d=b.equalsIgnoreCase("right")?12:b.equalsIgnoreCase("center")?8:4;for(a=c.nextSetBit(0);0<=a&&a<this.ac;a=c.nextSetBit(a+1))this.setHorizAlignment(a,d);if(this.setDefaults||!this.defaultsOnlyForNone)this.defaultAlignment=
d}else if("pointer"===a){d=b.intValue();if(!this.setDefaults)for(a=c.nextSetBit(0);0<=a&&a<this.ac;a=c.nextSetBit(a+1))this.setPointer(a,d);if(this.setDefaults||!this.defaultsOnlyForNone)this.defaultPointer=d}else if("front"===a){d=b.booleanValue();if(!this.setDefaults)for(a=c.nextSetBit(0);0<=a&&a<this.ac;a=c.nextSetBit(a+1))this.setZPos(a,32,d);if(this.setDefaults||!this.defaultsOnlyForNone)this.defaultZPos=d?32:0}else if("group"===a){d=b.booleanValue();if(!this.setDefaults)for(a=c.nextSetBit(0);0<=
a&&a<this.ac;a=c.nextSetBit(a+1))this.setZPos(a,16,d);if(this.setDefaults||!this.defaultsOnlyForNone)this.defaultZPos=d?16:0}else if("display"===a||"toggleLabel"===a){e="toggleLabel"===a?0:b.booleanValue()?1:-1;null==this.mads&&(this.mads=D(this.ac,0));var q=k=f=g=null,l=this.checkStringLength(c.length()),d=this.defaultBgcolix,j=this.checkBgColixLength(d,c.length()),h=0<=e?1:-1;for(a=c.nextSetBit(0);0<=a&&a<this.ac;a=c.nextSetBit(a+1)){var m=this.atoms[a];a<l&&null!=this.strings[a]?this.mads[a]=1==
e||0==e&&0>this.mads[a]?1:-1:(this.mads[a]=h,m.getGroup3(!1).equals("UNK")?(null==k&&(k=this.vwr.getStandardLabelFormat(1),q=JM.LabelToken.compile(this.vwr,k,"\x00",null)),b=k,d=q):(null==g&&(g=this.vwr.getStandardLabelFormat(2),f=JM.LabelToken.compile(this.vwr,g,"\x00",null)),b=g,d=f),this.strings[a]=JM.LabelToken.formatLabelAtomArray(this.vwr,m,d,"\x00",null,this.ptTemp),this.formats[a]=b,this.bsSizeSet.set(a),a<j&&!this.bsBgColixSet.get(a)&&this.setBgcolix(a,this.defaultBgcolix));m.setShapeVisibility(this.vf,
null!=this.strings&&a<this.strings.length&&null!=this.strings[a]&&0<=this.mads[a])}}else"pymolLabels"===a?this.setPymolLabels(b,c):("deleteModelAtoms"===a&&(this.labelBoxes=null,d=b[2][1],e=b[2][2],this.fids=JU.AU.deleteElements(this.fids,d,e),this.bgcolixes=JU.AU.deleteElements(this.bgcolixes,d,e),this.offsets=JU.AU.deleteElements(this.offsets,d,e),this.formats=JU.AU.deleteElements(this.formats,d,e),this.strings=JU.AU.deleteElements(this.strings,d,e),JU.BSUtil.deleteBits(this.bsFontSet,c),JU.BSUtil.deleteBits(this.bsBgColixSet,
c)),this.setPropAS(a,b,c))},"~S,~O,JU.BS");f(c$,"isPickingMode",function(){return 2==this.vwr.getPickingMode()&&null!=this.labelBoxes});f(c$,"checkStringLength",function(a){a=Math.min(this.ac,a);if(null==this.strings||a>this.strings.length)this.formats=JU.AU.ensureLengthS(this.formats,a),this.strings=JU.AU.ensureLengthS(this.strings,a),null==this.bsSizeSet&&(this.bsSizeSet=JU.BS.newN(a));return a},"~N");f(c$,"checkBgColixLength",function(a,b){b=Math.min(this.ac,b);if(0==a)return null==this.bgcolixes?
0:this.bgcolixes.length;if(null==this.bgcolixes||b>this.bgcolixes.length)this.bgcolixes=JU.AU.ensureLengthShort(this.bgcolixes,b);return b},"~N,~N");f(c$,"setPymolLabels",function(a,b){this.setScaling();var c=this.checkStringLength(this.ac);this.checkColixLength(-1,c);for(var d=b.nextSetBit(0);0<=d&&d<c;d=b.nextSetBit(d+1))this.setPymolLabel(d,a.get(Integer.$valueOf(d)),null)},"java.util.Map,JU.BS");f(c$,"setPymolOffset",function(a,b){var c=this.getLabel(a);if(null==c){if(null==this.strings||a>=this.strings.length||
null==this.strings[a])return;c=null!=this.bsFontSet&&this.bsFontSet.get(a)?this.fids[a]:-1;0>c&&this.setFont(a,c=this.defaultFontId);c=JM.Text.newLabel(this.vwr,JU.Font.getFont3D(c),this.strings[a],this.getColix2(a,this.atoms[a],!1),this.getColix2(a,this.atoms[a],!0),0,this.scalePixelsPerMicron);this.setPymolLabel(a,c,this.formats[a])}c.pymolOffset=b},"~N,~A");f(c$,"setScaling",function(){this.isActive=!0;null==this.bsSizeSet&&(this.bsSizeSet=JU.BS.newN(this.ac));this.scalePixelsPerMicron=(this.isScaled=
this.vwr.getBoolean(603979845))?1E4*this.vwr.getScalePixelsPerAngstrom(!1):0});f(c$,"setPymolLabel",function(a,b,c){if(null!=b){var d=b.text,e=this.atoms[a];this.addString(e,a,d,null==c?JU.PT.rep(d,"%","%%"):c);e.setShapeVisibility(this.vf,!0);0<=b.colix&&this.setLabelColix(a,b.colix,J.c.PAL.UNKNOWN.id);this.setFont(a,b.font.fid);this.putLabel(a,b)}},"~N,JM.Text,~S");f(c$,"setLabel",function(a,b,c,d){var e=this.atoms[c],g=a[0];null==g&&(g=a[0]=JM.LabelToken.compile(this.vwr,b,"\x00",null));a=null==
g?null:JM.LabelToken.formatLabelAtomArray(this.vwr,e,g,"\x00",null,this.ptTemp);e=this.addString(e,c,a,b);d=(new Boolean(d|(e||null==a))).valueOf();e=this.getLabel(c);this.isScaled&&d?(e=JM.Text.newLabel(this.vwr,null,a,0,0,0,this.scalePixelsPerMicron),this.putLabel(c,e)):null!=e&&null!=a&&(e.setText(a),e.textUnformatted=b);d&&(this.defaultOffset!=JV.JC.LABEL_DEFAULT_OFFSET&&this.setOffsets(c,this.defaultOffset),4!=this.defaultAlignment&&this.setHorizAlignment(c,this.defaultAlignment),0!=(this.defaultZPos&
32)?this.setZPos(c,32,!0):0!=(this.defaultZPos&16)&&this.setZPos(c,16,!0),0!=this.defaultPointer&&this.setPointer(c,this.defaultPointer),(0!=this.defaultColix||0!=this.defaultPaletteID)&&this.setLabelColix(c,this.defaultColix,this.defaultPaletteID),0!=this.defaultBgcolix&&this.setBgcolix(c,this.defaultBgcolix),this.defaultFontId!=this.zeroFontId&&this.setFont(c,this.defaultFontId))},"~A,~S,~N,~B");f(c$,"addString",function(a,b,c,d){a.setShapeVisibility(this.vf,null!=c);a=null!=d;var e=null==this.strings[b];
this.strings[b]=c;this.formats[b]=a&&0<=d.indexOf("%{")?c:d;this.bsSizeSet.setBitTo(b,a);return e},"JM.Atom,~N,~S,~S");h(c$,"getProperty",function(a,b){return a.equals("offsets")?this.offsets:a.equals("label")?null!=this.strings&&b<this.strings.length&&null!=this.strings[b]?this.strings[b]:"":null},"~S,~N");f(c$,"putLabel",function(a,b){null==b?this.atomLabels.remove(Integer.$valueOf(a)):(this.atomLabels.put(Integer.$valueOf(a),b),b.textUnformatted=this.formats[a])},"~N,JM.Text");f(c$,"getLabel",
function(a){return this.atomLabels.get(Integer.$valueOf(a))},"~N");f(c$,"putBox",function(a,b){null==this.labelBoxes&&(this.labelBoxes=new java.util.Hashtable);this.labelBoxes.put(Integer.$valueOf(a),b)},"~N,~A");f(c$,"getBox",function(a){return null==this.labelBoxes?null:this.labelBoxes.get(Integer.$valueOf(a))},"~N");f(c$,"setLabelColix",function(a,b,c){this.setColixAndPalette(b,c,a);var d;if(null!=this.colixes&&null!=(d=this.getLabel(a)))d.colix=this.colixes[a]},"~N,~N,~N");f(c$,"setBgcolix",function(a,
b){this.bgcolixes[a]=b;this.bsBgColixSet.setBitTo(a,0!=b);var c=this.getLabel(a);null!=c&&(c.bgcolix=b)},"~N,~N");f(c$,"setOffsets",function(a,b){if(null==this.offsets||a>=this.offsets.length){if(b==JV.JC.LABEL_DEFAULT_OFFSET)return;this.offsets=JU.AU.ensureLengthI(this.offsets,this.ac)}this.offsets[a]=this.offsets[a]&63|b;var c=this.getLabel(a);null!=c&&c.setOffset(b)},"~N,~N");f(c$,"setHorizAlignment",function(a,b){if(null==this.offsets||a>=this.offsets.length){switch(b){case 0:case 4:return}this.offsets=
JU.AU.ensureLengthI(this.offsets,this.ac)}0==b&&(b=4);this.offsets[a]=JV.JC.setHorizAlignment(this.offsets[a],b);var c=this.getLabel(a);null!=c&&c.setAlignment(b)},"~N,~N");f(c$,"setPointer",function(a,b){if(null==this.offsets||a>=this.offsets.length){if(0==b)return;this.offsets=JU.AU.ensureLengthI(this.offsets,this.ac)}this.offsets[a]=JV.JC.setPointer(this.offsets[a],b);var c=this.getLabel(a);null!=c&&(c.pointer=b)},"~N,~N");f(c$,"setZPos",function(a,b,c){if(null==this.offsets||a>=this.offsets.length){if(!c)return;
this.offsets=JU.AU.ensureLengthI(this.offsets,this.ac)}this.offsets[a]=JV.JC.setZPosition(this.offsets[a],c?b:0)},"~N,~N,~B");f(c$,"setFont",function(a,b){if(null==this.fids||a>=this.fids.length){if(b==this.zeroFontId)return;this.fids=JU.AU.ensureLengthByte(this.fids,this.ac)}this.fids[a]=b;this.bsFontSet.set(a);var c=this.getLabel(a);null!=c&&c.setFontFromFid(b)},"~N,~N");h(c$,"setAtomClickability",function(){if(null!=this.strings)for(var a=this.strings.length;0<=--a;)null!=this.strings[a]&&(this.ms.at.length>
a&&null!=this.ms.at[a]&&!this.ms.isAtomHidden(a))&&this.ms.at[a].setClickable(this.vf)});h(c$,"checkObjectClicked",function(a,b){if(!this.isPickingMode())return null;var c=this.findNearestLabel(a,b);if(0>c)return null;var d=new java.util.Hashtable;d.put("type","label");d.put("atomIndex",Integer.$valueOf(c));this.lastPicked=c;return d},"~N,~N,~N,JU.BS,~B");h(c$,"checkObjectDragged",function(a,b,c,d){if(!this.isPickingMode())return!1;if(-2147483648==a)return a=this.findNearestLabel(c,d),0<=a?(this.lastPicked=
this.pickedAtom=a,this.vwr.acm.setDragAtomIndex(a),this.pickedX=c,this.pickedY=d,this.pickedOffset=null==this.offsets||this.pickedAtom>=this.offsets.length?JV.JC.LABEL_DEFAULT_OFFSET:this.offsets[this.pickedAtom],!0):!1;2147483647==a&&(this.pickedAtom=-1);if(0>this.pickedAtom)return!1;this.move2D(this.pickedAtom,c,d);return!0},"~N,~N,~N,~N,~N,JU.BS");f(c$,"findNearestLabel",function(a,b){if(null==this.labelBoxes)return-1;for(var c=3.4028235E38,d=-1,e=3.4028235E38,g=this.vwr.antialiased?2:1,f,k=this.labelBoxes.entrySet().iterator();k.hasNext()&&
((f=k.next())||1);)if(this.atoms[f.getKey().intValue()].isVisible(this.vf|9)){var q=f.getValue(),l=(a-q[0])*g,j=(b-q[1])*g;0>=l||(0>=j||l>=q[2]||j>=q[3]||q[4]>e)||(e=q[4],q=Math.min(Math.abs(l-q[2]/2),Math.abs(j-q[3]/2)),q<=c&&(c=q,d=f.getKey().intValue()))}return d},"~N,~N");f(c$,"move2D",function(a,b,c){var d=JV.JC.getXOffset(this.pickedOffset),e=JV.JC.getYOffset(this.pickedOffset),d=d+(b-this.pickedX),e=e-(c-this.pickedY);b=JV.JC.getOffset(d,e,!0);this.setOffsets(a,b)},"~N,~N,~N");f(c$,"getColix2",
function(a,b,c){c?a=null==this.bgcolixes||a>=this.bgcolixes.length?0:this.bgcolixes[a]:(a=null==this.colixes||a>=this.colixes.length?0:this.colixes[a],a=JU.C.getColixInherited(a,b.colixAtom),JU.C.isColixTranslucent(a)&&(a=JU.C.getColixTranslucent3(a,!1,0)));return a},"~N,JM.Atom,~B");c$.nullToken=c$.prototype.nullToken=y(-1,[null])});r("J.shape");s(["J.api.JmolMeasurementClient","J.shape.AtomShape","JU.Lst"],"J.shape.Measures","java.lang.Boolean $.Float java.util.Hashtable JU.AU $.BS $.PT $.SB JM.Measurement $.MeasurementData JU.BSUtil $.C $.Escape".split(" "),
function(){c$=u(function(){this.strFormat=this.bsSelected=null;this.mustNotBeConnected=this.mustBeConnected=!1;this.intramolecular=this.radiusData=null;this.measureAllModels=!1;this.measurementCount=0;this.mPending=this.measurements=null;this.colix=0;this.htMin=this.font3d=this.defaultTickInfo=this.tickInfo=null;this.tokAction=0;t(this,arguments)},J.shape,"Measures",J.shape.AtomShape,J.api.JmolMeasurementClient);w(c$,function(){this.measurements=new JU.Lst});h(c$,"initModelSet",function(){for(var a=
this.measurements.size();0<=--a;){var b=this.measurements.get(a);null!=b&&(b.ms=this.ms)}this.atoms=this.ms.at});h(c$,"initShape",function(){null==this.font3d&&(this.font3d=this.vwr.gdata.getFont3D(18))});h(c$,"setSize",function(a){this.mad=a},"~N,JU.BS");h(c$,"setProperty",function(a,b){var c;if("clearModelIndex"===a)for(var d=0;d<this.measurementCount;d++)this.measurements.get(d).setModelIndex(0);else if("color"===a)this.setColor(JU.C.getColixO(b));else if("font"===a)this.font3d=b;else if("hideAll"===
a)this.showHide(b.booleanValue());else if("pending"===a)this.mPending=b,null!=this.mPending&&1<this.mPending.count&&this.vwr.setStatusMeasuring("measurePending",this.mPending.count,J.shape.Measures.getMessage(this.mPending,!1),this.mPending.value);else{var e;if((e="refresh"===a)||"refreshTrajectories"===a)for(d=this.measurements.size();0<=--d;)null!=(c=this.measurements.get(d))&&(e||c.isTrajectory)&&c.refresh(null);else if("select"===a)0==JU.BSUtil.cardinalityOf(b)?this.bsSelected=null:(this.bsSelected=
new JU.BS,this.bsSelected.or(b));else if("setFormats"===a)this.setFormats(b);else if(this.measureAllModels=this.vwr.getBoolean(603979877),"delete"===a)this.deleteO(b),this.setIndices();else{this.bsSelected=null;if("maps"===a)for(d=0;d<b.length;d++)c=b[d].length,2>c||4<c||(e=x(c+1,0),e[0]=c,Zystem.arraycopy(b[d],0,e,1,c),this.toggleOn(e));else if("measure"===a){this.tickInfo=b.tickInfo;if(null!=b.tickInfo&&b.tickInfo.id.equals("default")){this.defaultTickInfo=b.tickInfo;return}if(b.isAll&&2==b.points.size()&&
n(b.points.get(0),JU.BS))switch(JM.Measurement.nmrType(this.vwr.getDistanceUnits(b.strFormat))){case 2:b.htMin=this.vwr.getNMRCalculation().getMinDistances(b)}this.tickInfo=b.tickInfo;this.radiusData=b.radiusData;this.htMin=b.htMin;this.mustBeConnected=b.mustBeConnected;this.mustNotBeConnected=b.mustNotBeConnected;this.intramolecular=b.intramolecular;this.strFormat=b.strFormat;if(b.isAll){null!=this.tickInfo&&this.define(b,12291);this.define(b,b.tokAction);this.setIndices();return}d=this.setSingleItem(b.points);
null!=b.thisID&&(d.thisID=b.thisID,d.mad=b.mad,0!=b.colix&&(d.colix=b.colix),d.strFormat=b.strFormat,d.text=b.text);d.units=b.units;d.property=b.property;d.fixedValue=b.fixedValue;switch(b.tokAction){case 266284:this.doAction(b,b.thisID,266284);break;case 12291:this.defineAll(-2147483648,d,!0,!1,!1);this.setIndices();break;case 1073742335:this.showHideM(d,!1);break;case 1073742334:this.showHideM(d,!0);break;case 1665140738:null!=b.thisID&&this.doAction(b,b.thisID,1665140738);break;case 12290:null==
b.thisID?this.deleteM(d):this.deleteO(b.thisID);this.toggle(d);break;case 268435538:this.toggle(d)}return}if("clear"===a)this.clear();else if("deleteModelAtoms"===a){this.atoms=b[1];e=b[2][0];for(var g=b[2][1],f=b[2][2],k=g+f,d=this.measurementCount;0<=--d;){c=this.measurements.get(d);for(var j=c.countPlusIndices,l=1;l<=j[0];l++){var h=j[l];if(h>=g){if(h<k){this.deleteI(d);break}j[l]-=f}else if(0>h)if(h=c.getAtom(l),h.mi>e)h.mi--;else if(h.mi==e){this.deleteI(d);break}}}}else"reformatDistances"===
a?this.reformatDistances():"hide"===a?n(b,String)?this.doAction(null,b,12294):this.showHideM((new JM.Measurement).setPoints(this.ms,b,null,null),!0):"refresh"===a?this.doAction(b,null,266284):"show"===a?n(b,String)?this.doAction(null,b,134222350):this.showHideM((new JM.Measurement).setPoints(this.ms,b,null,null),!1):"toggle"===a?n(b,String)?this.doAction(null,b,268435538):this.toggle((new JM.Measurement).setPoints(this.ms,b,null,null)):"toggleOn"===a&&(n(b,String)?this.doAction(null,b,1073742335):
this.toggleOn(b))}}},"~S,~O,JU.BS");f(c$,"setSingleItem",function(a){var b=Array(4),c=x(5,0);c[0]=a.size();for(var d=a.size();0<=--d;){var e=a.get(d);if(n(e,JU.BS)){e=e.nextSetBit(0);if(0>e)return null;c[d+1]=e}else b[d]=e,c[d+1]=-2-d}return(new JM.Measurement).setPoints(this.ms,c,b,null==this.tickInfo?this.defaultTickInfo:this.tickInfo)},"JU.Lst");h(c$,"getProperty",function(a,b){return"pending".equals(a)?this.mPending:"count".equals(a)?Integer.$valueOf(this.measurementCount):"countPlusIndices".equals(a)?
b<this.measurementCount?this.measurements.get(b).countPlusIndices:null:"stringValue".equals(a)?b<this.measurementCount?this.measurements.get(b).getString():null:"pointInfo".equals(a)?this.measurements.get(m(b/10)).getLabel(b%10,!1,!1):"info".equals(a)?this.getAllInfo():"infostring".equals(a)?this.getAllInfoAsString():null},"~S,~N");f(c$,"clear",function(){0!=this.measurementCount&&(this.measurementCount=0,this.measurements.clear(),this.mPending=null,this.vwr.setStatusMeasuring("measureDeleted",-1,
"all",0))});f(c$,"setColor",function(a){null==this.bsColixSet&&(this.bsColixSet=new JU.BS);null==this.bsSelected&&(this.colix=a);for(var b,c=this.measurements.size();0<=--c;)if(null!=(b=this.measurements.get(c))&&(null!=this.bsSelected&&this.bsSelected.get(c)||null==this.bsSelected&&(0==a||0==b.colix)))b.colix=a,this.bsColixSet.set(c)},"~N");f(c$,"setFormats",function(a){null!=a&&0==a.length&&(a=null);for(var b=this.measurements.size();0<=--b;)(null==this.bsSelected||this.bsSelected.get(b))&&this.measurements.get(b).formatMeasurementAs(a,
null,!1)},"~S");f(c$,"showHide",function(a){for(var b=this.measurements.size();0<=--b;)if(null==this.bsSelected||this.bsSelected.get(b))this.measurements.get(b).isHidden=a},"~B");f(c$,"showHideM",function(a,b){var c=this.find(a);0<=c&&(this.measurements.get(c).isHidden=b)},"JM.Measurement,~B");f(c$,"toggle",function(a){this.htMin=this.radiusData=null;var b=this.find(a),c;0<=b&&!(c=this.measurements.get(b)).isHidden?this.defineAll(b,c,!0,!1,!1):this.defineAll(-1,a,!1,!0,!1);this.setIndices()},"JM.Measurement");
f(c$,"toggleOn",function(a){this.htMin=this.radiusData=null;this.bsSelected=new JU.BS;a=(new JM.Measurement).setPoints(this.ms,a,null,this.defaultTickInfo);this.defineAll(-2147483648,a,!1,!0,!0);a=this.find(a);0<=a&&this.bsSelected.set(a);this.setIndices();this.reformatDistances()},"~A");f(c$,"deleteM",function(a){this.htMin=this.radiusData=null;a=this.find(a);0<=a&&this.defineAll(a,this.measurements.get(a),!0,!1,!1);this.setIndices()},"JM.Measurement");f(c$,"deleteO",function(a){n(a,Integer)?this.deleteI(a.intValue()):
n(a,String)?this.doAction(null,a,12291):JU.AU.isAI(a)&&this.defineAll(-2147483648,(new JM.Measurement).setPoints(this.ms,a,null,null),!0,!1,!1)},"~O");f(c$,"defineAll",function(a,b,c,d,e){if(this.measureAllModels){if(d&&(this.defineAll(a,b,!0,!1,!1),c))return;a=new JU.Lst;d=b.count;for(e=1;e<=d;e++){var g=b.getAtomIndex(e);a.addLast(0<=g?this.vwr.ms.getAtoms(1094715393,Integer.$valueOf(this.atoms[g].getAtomNumber())):b.getAtom(e))}this.define((new JM.MeasurementData).init(null,this.vwr,a).set(this.tokAction,
this.htMin,this.radiusData,b.property,this.strFormat,null,this.tickInfo,this.mustBeConnected,this.mustNotBeConnected,this.intramolecular,!0,0,0,null,NaN),c?12291:12290)}else c?(-2147483648==a&&(a=this.find(b)),0<=a&&this.deleteI(a)):this.defineMeasurement(a,b,e)},"~N,JM.Measurement,~B,~B,~B");f(c$,"find",function(a){return null==a.thisID?JM.Measurement.find(this.measurements,a):-1},"JM.Measurement");f(c$,"setIndices",function(){for(var a=0;a<this.measurementCount;a++)this.measurements.get(a).index=
a});f(c$,"define",function(a,b){this.tokAction=b;a.define(this,this.ms)},"JM.MeasurementData,~N");h(c$,"processNextMeasure",function(a){var b=this.find(a);if(0<=b)12291==this.tokAction?this.deleteI(b):null!=this.strFormat?this.measurements.get(b).formatMeasurementAs(this.strFormat,null,!0):this.measurements.get(b).isHidden=1073742334==this.tokAction;else if(12290==this.tokAction||268435538==this.tokAction)a.tickInfo=null==this.tickInfo?this.defaultTickInfo:this.tickInfo,this.defineMeasurement(-1,
a,!0)},"JM.Measurement");f(c$,"defineMeasurement",function(a,b,c){var d=b.getMeasurement(null);null!=this.htMin&&!b.isMin(this.htMin)||null!=this.radiusData&&!b.isInRange(this.radiusData,d)||(-2147483648==a&&(a=this.find(b)),0<=a?(this.measurements.get(a).isHidden=!1,c&&this.bsSelected.set(a)):(a=(new JM.Measurement).setM(this.ms,b,d,0==b.colix?this.colix:b.colix,this.strFormat,this.measurementCount),a.$isValid&&(this.measurements.addLast(a),this.vwr.setStatusMeasuring("measureCompleted",this.measurementCount++,
J.shape.Measures.getMessage(a,!1),a.value))))},"~N,JM.Measurement,~B");c$.getMessage=f(c$,"getMessage",function(a,b){var c=new JU.SB;c.append("[");for(var d=1;d<=a.count;d++)1<d&&c.append(", "),c.append(a.getLabel(d,b,!1));c.append(", ");c.append(a.getString());c.append("]");return c.toString()},"JM.Measurement,~B");f(c$,"deleteI",function(a){if(!(a>=this.measurements.size()||0>a)){var b=J.shape.Measures.getMessage(this.measurements.get(a),!0);this.measurements.removeItemAt(a);this.measurementCount--;
this.vwr.setStatusMeasuring("measureDeleted",a,b,0)}},"~N");f(c$,"doAction",function(a,b,c){b=b.toUpperCase().$replace("?","*");for(var d=JU.PT.isWild(b),e=this.measurements.size();0<=--e;){var g=this.measurements.get(e);if(null!=g.thisID&&(g.thisID.equalsIgnoreCase(b)||d&&JU.PT.isMatch(g.thisID.toUpperCase(),b,!0,!0)))switch(c){case 266284:0!=a.colix&&(g.colix=a.colix);0!=a.mad&&(g.mad=a.mad);null!=a.strFormat&&(g.strFormat=g.strFormat.substring(0,2)+a.strFormat.substring(2));null!=a.text&&(null==
g.text?g.text=a.text:(null!=a.text.font&&(g.text.font=a.text.font),g.text.text=null,0!=a.text.align&&(g.text.align=a.text.align),0!=a.colix&&(g.labelColix=g.text.colix=a.text.colix)));g.formatMeasurement(null);break;case 1665140738:g.mad=a.mad;break;case 12291:g=J.shape.Measures.getMessage(this.measurements.get(e),!0);this.measurements.removeItemAt(e);this.measurementCount--;this.vwr.setStatusMeasuring("measureDeleted",e,g,0);break;case 134222350:g.isHidden=!1;break;case 12294:g.isHidden=!0;break;
case 268435538:g.isHidden=!g.isHidden;break;case 1073742335:g.isHidden=!1}}},"JM.MeasurementData,~S,~N");f(c$,"reformatDistances",function(){for(var a=this.measurementCount;0<=--a;)this.measurements.get(a).reformatDistanceIfSelected()});f(c$,"getAllInfo",function(){for(var a=new JU.Lst,b=0;b<this.measurementCount;b++)a.addLast(this.getInfo(b));return a});f(c$,"getAllInfoAsString",function(){for(var a="Measurement Information",b=0;b<this.measurementCount;b++)a+="\n"+this.getInfoAsString(b);return a});
f(c$,"getInfo",function(a){var b=this.measurements.get(a),c=b.count,d=new java.util.Hashtable;d.put("index",Integer.$valueOf(a));d.put("type",2==c?"distance":3==c?"angle":"dihedral");d.put("strMeasurement",b.getString());d.put("count",Integer.$valueOf(c));d.put("id",""+b.thisID);d.put("value",Float.$valueOf(b.value));d.put("hidden",Boolean.$valueOf(b.isHidden));d.put("visible",Boolean.$valueOf(b.isVisible));a=b.tickInfo;null!=a&&(d.put("ticks",a.ticks),null!=a.scale&&d.put("tickScale",a.scale),null!=
a.tickLabelFormats&&d.put("tickLabelFormats",a.tickLabelFormats),Float.isNaN(a.first)||d.put("tickStart",Float.$valueOf(a.first)));a=new JU.Lst;for(var e=1;e<=c;e++){var g=new java.util.Hashtable,f=b.getAtomIndex(e);g.put("_ipt",Integer.$valueOf(f));g.put("coord",JU.Escape.eP(b.getAtom(e)));g.put("atomno",Integer.$valueOf(0>f?-1:this.atoms[f].getAtomNumber()));g.put("info",0>f?"<point>":this.atoms[f].getInfo());a.addLast(g)}d.put("atoms",a);return d},"~N");h(c$,"getInfoAsString",function(a){return this.measurements.get(a).getInfoAsString(null)},
"~N");f(c$,"setVisibilityInfo",function(){var a=this.vwr.getVisibleFramesBitSet(),b=this.measurementCount;a:for(;0<=--b;){var c=this.measurements.get(b);c.isVisible=!1;if(!(0==this.mad||c.isHidden)){for(var d=c.count;0<d;d--){var e=c.getAtomIndex(d);if(0<=e){if(!this.ms.at[e].isClickable())continue a}else if(e=c.getAtom(d).mi,0<=e&&!a.get(e))continue a}c.isVisible=!0}}})});r("J.shape");s(["J.shape.TextShape"],"J.shape.Echo",["java.util.Hashtable","JU.Lst","$.PT","JM.Text","JU.C"],function(){c$=z(J.shape,
"Echo",J.shape.TextShape);h(c$,"initShape",function(){this.setProperty("target","top",null)});h(c$,"setProperty",function(a,b){if("scalereference"===a){if(null!=this.currentObject){var c=b.floatValue();this.currentObject.setScalePixelsPerMicron(0==c?0:1E4/c)}}else if("point"===a)null!=this.currentObject&&(c=this.currentObject,c.pointerPt=null==b?null:b,c.pointer=null==b?0:1);else if("xyz"===a&&null!=this.currentObject&&this.vwr.getBoolean(603979845)&&this.currentObject.setScalePixelsPerMicron(1E4*
this.vwr.getScalePixelsPerAngstrom(!1)),"scale"===a)if(null!=this.currentObject)this.currentObject.setScale(b.floatValue());else{if(this.isAll)for(var d=this.objects.values().iterator();d.hasNext()&&((c=d.next())||1);)c.setScale(b.floatValue())}else if("image"===a)if(null!=this.currentObject)this.currentObject.setImage(b);else{if(this.isAll)for(d=this.objects.values().iterator();d.hasNext()&&((c=d.next())||1);)c.setImage(b)}else if("thisID"===a)c=b,this.currentObject=this.objects.get(c),null==this.currentObject&&
JU.PT.isWild(c)&&(this.thisID=c.toUpperCase());else if("hidden"===a){var e=b.booleanValue();if(null!=this.currentObject)this.currentObject.hidden=e;else if(this.isAll||null!=this.thisID)for(d=this.objects.values().iterator();d.hasNext()&&((c=d.next())||1);)if(this.isAll||JU.PT.isMatch(c.target.toUpperCase(),this.thisID,!0,!0))c.hidden=e}else if("script"===a)null!=this.currentObject&&this.currentObject.setScript(b);else if("xpos"===a)null!=this.currentObject&&this.currentObject.setMovableX(b.intValue());
else if("ypos"===a)null!=this.currentObject&&this.currentObject.setMovableY(b.intValue());else if("%xpos"===a)null!=this.currentObject&&this.currentObject.setMovableXPercent(b.intValue());else if("%ypos"===a)null!=this.currentObject&&this.currentObject.setMovableYPercent(b.intValue());else if("%zpos"===a)null!=this.currentObject&&this.currentObject.setMovableZPercent(b.intValue());else if("xypos"===a)null!=this.currentObject&&(this.currentObject.setXYZ(null,!0),3.4028235E38==b.z?(this.currentObject.setMovableX(j(b.x)),
this.currentObject.setMovableY(j(b.y))):(this.currentObject.setMovableXPercent(j(b.x)),this.currentObject.setMovableYPercent(j(b.y))));else if("xyz"===a)null!=this.currentObject&&this.currentObject.setXYZ(b,!0);else if("offset"===a)null!=this.currentObject&&(this.currentObject.pymolOffset=b);else{if("target"===a&&(this.thisID=null,c=b.intern().toLowerCase(),"none"!==c&&"all"!==c)){this.isAll=!1;d=this.objects.get(c);null==d&&(d=3,e=4,"top"===c?(d=0,e=8):"middle"===c?(d=2,e=8):"bottom"===c?d=1:"error"===
c&&(d=0),d=JM.Text.newEcho(this.vwr,this.vwr.gdata.getFont3DFS("Serif",20),c,10,d,e,0),d.adjustForWindow=!0,this.objects.put(c,d),null!=this.currentFont&&d.setFont(this.currentFont,!0),null!=this.currentColor&&(d.colix=JU.C.getColixO(this.currentColor)),null!=this.currentBgColor&&(d.bgcolix=JU.C.getColixO(this.currentBgColor)),0!=this.currentTranslucentLevel&&d.setTranslucent(this.currentTranslucentLevel,!1),0!=this.currentBgTranslucentLevel&&d.setTranslucent(this.currentBgTranslucentLevel,!0));this.currentObject=
d;return}this.setPropTS(a,b,null)}},"~S,~O,JU.BS");h(c$,"getPropertyData",function(a,b){if("currentTarget"===a)return null!=this.currentObject&&null!=(b[0]=this.currentObject.target);if("checkID"===a){for(var c=b[0].toUpperCase(),d=JU.PT.isWild(c),e,g=this.objects.values().iterator();g.hasNext()&&((e=g.next())||1);){var f=e.target;if(f.equalsIgnoreCase(c)||d&&JU.PT.isMatch(f.toUpperCase(),c,!0,!0))return b[1]=f,!0}return!1}return this.getPropShape(a,b)},"~S,~A");h(c$,"getShapeDetail",function(){for(var a=
new java.util.Hashtable,b,c=this.objects.entrySet().iterator();c.hasNext()&&((b=c.next())||1);){var d=new java.util.Hashtable,e=b.getValue(),f=b.getKey();d.put("boxXY",e.boxXY);null!=e.xyz&&d.put("xyz",e.xyz);var j=e.image;null==j?d.put("text",null==e.text?"":e.text):(d.put("imageFile",e.text),d.put("imageWidth",Integer.$valueOf(this.vwr.apiPlatform.getImageWidth(j))),d.put("imageHeight",Integer.$valueOf(this.vwr.apiPlatform.getImageHeight(j))));a.put(f,d)}b=new JU.Lst;b.addLast(a);return b});A(c$,
"FONTFACE","Serif","FONTSIZE",20,"COLOR",10)});r("J.shape");s(["J.shape.TextShape"],"J.shape.Hover",["JU.AU","JM.Text","JU.C"],function(){c$=u(function(){this.hoverText=null;this.atomIndex=-1;this.text=this.xy=null;this.labelFormat="%U";this.specialLabel=this.atomFormats=null;t(this,arguments)},J.shape,"Hover",J.shape.TextShape);h(c$,"initShape",function(){this.isHover=!0;var a=this.vwr.gdata.getFont3DFSS("SansSerif","Plain",12),b=JU.C.getColixS("#FFFFC3");this.currentObject=this.hoverText=JM.Text.newLabel(this.vwr,
a,null,4,b,4,0);this.hoverText.adjustForWindow=!0});h(c$,"setProperty",function(a,b,c){if("target"===a)this.atomIndex=null==b?-1:b.intValue();else if("text"===a)this.text=b,null!=this.text&&0==this.text.length&&(this.text=null);else if("specialLabel"===a)this.specialLabel=b;else if("atomLabel"===a){a=b;null!=a&&0==a.length&&(a=null);b=this.vwr.ms.ac;if(null==this.atomFormats||this.atomFormats.length<b)this.atomFormats=Array(b);for(b=c.nextSetBit(0);0<=b;b=c.nextSetBit(b+1))this.atomFormats[b]=a}else"xy"===
a?this.xy=b:"label"===a?(this.labelFormat=b,null!=this.labelFormat&&0==this.labelFormat.length&&(this.labelFormat=null)):"deleteModelAtoms"===a?(null!=this.atomFormats&&(this.atomFormats=JU.AU.deleteElements(this.atomFormats,b[2][1],b[2][2])),this.atomIndex=-1):this.setPropTS(a,b,null)},"~S,~O,JU.BS");A(c$,"FONTFACE","SansSerif","FONTSTYLE","Plain","FONTSIZE",12)});r("J.render");s(null,"J.render.TextRenderer",["java.lang.Float","JM.Text"],function(){c$=z(J.render,"TextRenderer");c$.render=f(c$,"render",
function(a,b,c,d,e,f,h){if(null==a||null==a.image&&!a.doFormatText&&null==a.lines)return!1;var k=b.setC(a.colix);if(!k&&null==a.image&&(0==a.bgcolix||!b.setC(a.bgcolix)))return!1;a.setPosition(c,d,e,f);if(null==a.image&&0!=a.bgcolix&&(b.setC(a.bgcolix)&&J.render.TextRenderer.showBox(b,a.colix,j(a.boxX),j(a.boxY)+2*a.boxYoff2,a.z+2,a.zSlab,j(a.boxWidth),j(a.boxHeight),a.fontScale,!a.isEcho),!k))return!1;if(null==a.image)for(c=0;c<a.lines.length;c++)a.setXYA(h,c),b.drawString(a.lines[c],a.font,j(h[0]),
j(h[1]),a.z,a.zSlab,a.bgcolix);else b.drawImage(a.image,j(a.boxX),j(a.boxY),a.z,a.zSlab,a.bgcolix,j(a.boxWidth),j(a.boxHeight));if(0==(a.pointer&1)||!b.setC(0!=(a.pointer&2)&&0!=a.bgcolix?a.bgcolix:a.colix))return!0;c=a.boxWidth;h=a.boxHeight;d=NaN;c=a.boxX+(a.boxX>a.atomX+c?0:a.boxX+c<a.atomX-c?c:d=c/2);d=!Float.isNaN(d);h=a.boxY+(d&&a.boxY>a.atomY?0:d&&a.boxY+h<a.atomY?h:h/2);b.drawLineXYZ(a.atomX,a.atomY,a.atomZ,j(c),j(h),a.zSlab);return!0},"JM.Text,J.api.JmolRendererInterface,~N,~N,~B,~A,~A");
c$.renderSimpleLabel=f(c$,"renderSimpleLabel",function(a,b,c,d,e,f,h,k,q,l,m,p,r,n,s){var t=b.stringWidth(c)+8;p=m+p+8;var u=j(f[0]),v=j(f[1]);JM.Text.setBoxXY(t,p,q,l,f,s);l=f[0];f=f[1];0!=e&&a.setC(e)?J.render.TextRenderer.showBox(a,d,j(l),j(f),h,k,j(t),j(p),1,!0):a.setC(d);a.drawString(c,b,j(l+4),j(f+4+m),h-1,k,e);r&&(a.setC(n),0<q?a.drawLineXYZ(u,v,k,j(l),j(f+p/2),k):0>q&&a.drawLineXYZ(u,v,k,j(l+t),j(f+p/2),k))},"J.api.JmolRendererInterface,JU.Font,~S,~N,~N,~A,~N,~N,~N,~N,~N,~N,~B,~N,~B");c$.showBox=
f(c$,"showBox",function(a,b,c,d,e,f,h,k,j,l){a.fillTextRect(c,d,e,f,h,k);a.setC(b);l&&(2<=j?a.drawRect(c+3,d+3,e-1,f,h-6,k-6):a.drawRect(c+1,d+1,e-1,f,h-2,k-2))},"J.api.JmolRendererInterface,~N,~N,~N,~N,~N,~N,~N,~N,~B")});r("J.render");s(["J.render.FontLineShapeRenderer","JU.P3","$.P3i"],"J.render.LabelsRenderer",["JM.Text","J.render.TextRenderer","JV.JC"],function(){c$=u(function(){this.minZ=null;this.sppm=this.descent=this.ascent=0;this.screen=this.xy=null;this.fidPrevious=0;this.pTemp=null;this.fid=
this.labelColix=this.bgcolix=0;this.atomPt=this.atom=null;this.isAbsolute=!1;this.pointer=this.textAlign=this.offset=0;this.zSlab=-2147483648;this.zBox=0;this.boxXY=null;this.scalePixelsPerMicron=0;t(this,arguments)},J.render,"LabelsRenderer",J.render.FontLineShapeRenderer);w(c$,function(){this.minZ=x(1,0);this.xy=v(3,0);this.screen=new JU.P3i;this.pTemp=new JU.P3});h(c$,"render",function(){this.fidPrevious=0;var a=this.shape,b=a.strings,c=a.fids,d=a.offsets;if(null==b)return!1;var e=this.ms.at,f=
this.vwr.cm.colixBackgroundContrast,h=this.vwr.getBackgroundArgb();this.sppm=this.vwr.getScalePixelsPerAngstrom(!0);this.scalePixelsPerMicron=this.vwr.getBoolean(603979845)?1E4*this.sppm:0;this.imageFontScaling=this.vwr.imageFontScaling;var k=-1;this.minZ[0]=2147483647;for(var j=this.g3d.isAntialiased(),l=b.length;0<=--l;)if(this.atomPt=this.atom=e[l],this.isVisibleForMe(this.atom)){var r=b[l];if(!(null==r||0==r.length||null!=a.mads&&0>a.mads[l])){this.labelColix=a.getColix2(l,this.atom,!1);this.bgcolix=
a.getColix2(l,this.atom,!0);0==this.bgcolix&&this.vwr.gdata.getColorArgbOrGray(this.labelColix)==h&&(this.labelColix=f);this.fid=null==c||l>=c.length||0==c[l]?a.zeroFontId:c[l];this.offset=null==d||l>=d.length?0:d[l];var p=0!=(this.offset&32),n=0!=(this.offset&16);this.textAlign=JV.JC.getAlignment(this.offset);this.isAbsolute=JV.JC.isOffsetAbsolute(this.offset);this.pointer=JV.JC.getPointer(this.offset);this.zSlab=this.atom.sZ-m(this.atom.sD/2)-3;1>this.zSlab&&(this.zSlab=1);this.zBox=this.zSlab;
n?(p=this.atom.group,n=p.groupIndex,n!=k&&(p.getMinZ(e,this.minZ),k=n),this.zBox=this.minZ[0]):p&&(this.zBox=1);1>this.zBox&&(this.zBox=1);p=a.getLabel(l);this.boxXY=!this.isExport||this.vwr.creatingImage?a.getBox(l):v(5,0);null==this.boxXY&&a.putBox(l,this.boxXY=v(5,0));p=this.renderLabelOrMeasure(p,r);null!=p&&a.putLabel(l,p);j&&(this.boxXY[0]/=2,this.boxXY[1]/=2);this.boxXY[4]=this.zBox}}return!1});f(c$,"renderLabelOrMeasure",function(a,b){var c=!1;if(null!=a)null==a.font&&a.setFontFromFid(this.fid),
a.atomX=this.atomPt.sX,a.atomY=this.atomPt.sY,a.atomZ=this.zSlab,null==a.pymolOffset?(a.setXYZs(this.atomPt.sX,this.atomPt.sY,this.zBox,this.zSlab),a.colix=this.labelColix,a.bgcolix=this.bgcolix):a.getPymolScreenOffset(this.atomPt,this.screen,this.zSlab,this.pTemp,this.sppm);else{c=4==this.textAlign||0==this.textAlign;if(this.fid!=this.fidPrevious||0==this.ascent)this.vwr.gdata.setFontFid(this.fid),this.fidPrevious=this.fid,this.font3d=this.vwr.gdata.getFont3DCurrent(),c&&(this.ascent=this.font3d.getAscent(),
this.descent=this.font3d.getDescent());if(c&&1==this.imageFontScaling&&0==this.scalePixelsPerMicron&&0>b.indexOf("|")&&0>b.indexOf("\n")&&0>b.indexOf("<su")&&0>b.indexOf("<co")){var c=0!=(this.pointer&1),d=0!=(this.pointer&2)&&0!=this.bgcolix?this.bgcolix:this.labelColix;this.boxXY[0]=this.atomPt.sX;this.boxXY[1]=this.atomPt.sY;J.render.TextRenderer.renderSimpleLabel(this.g3d,this.font3d,b,this.labelColix,this.bgcolix,this.boxXY,this.zBox,this.zSlab,JV.JC.getXOffset(this.offset),JV.JC.getYOffset(this.offset),
this.ascent,this.descent,c,d,this.isAbsolute);return null}a=JM.Text.newLabel(this.vwr,this.font3d,b,this.labelColix,this.bgcolix,this.textAlign,0);a.atomX=this.atomPt.sX;a.atomY=this.atomPt.sY;a.atomZ=this.zSlab;a.setXYZs(this.atomPt.sX,this.atomPt.sY,this.zBox,this.zSlab);c=!0}null==a.pymolOffset&&(null==a.font&&a.setFontFromFid(this.font3d.fid),a.setOffset(this.offset),0!=this.textAlign&&a.setAlignment(this.textAlign));a.pointer=this.pointer;J.render.TextRenderer.render(a,this.g3d,this.scalePixelsPerMicron,
this.imageFontScaling,this.isAbsolute,this.boxXY,this.xy);return c?a:null},"JM.Text,~S")});r("J.render");s(["J.render.LabelsRenderer"],"J.render.MeasuresRenderer","java.util.Hashtable JU.A4 $.M3 $.Measure $.P3 J.render.FontLineShapeRenderer JU.Point3fi".split(" "),function(){c$=u(function(){this.modulating=this.doJustify=!1;this.mad0=0;this.p=this.m=this.mpts=null;this.count=0;this.matrixT=this.aaT=null;t(this,arguments)},J.render,"MeasuresRenderer",J.render.LabelsRenderer);h(c$,"initRenderer",function(){this.mpts=
new java.util.Hashtable;this.p=Array(4)});h(c$,"render",function(){if(!this.g3d.checkTranslucent(!1))return!1;null==this.atomPt&&(this.atomPt=new JU.Point3fi);var a=this.shape;if(a.ms!==this.ms)return Zystem.out.println("!measure wrong modelset!"),a.clear(),!1;this.doJustify=this.vwr.getBoolean(603979870);this.modulating=null!=this.ms.bsModulated;this.imageFontScaling=this.vwr.imageFontScaling;this.mad0=a.mad;this.font3d=this.vwr.gdata.getFont3DScaled(a.font3d,this.imageFontScaling);this.m=a.mPending;
!this.isExport&&(null!=this.m&&0!=(this.count=this.m.count))&&this.renderPendingMeasurement();if(!this.vwr.getBoolean(603979926))return!1;var b=this.vwr.getBoolean(603979878);a.setVisibilityInfo();for(var c=a.measurementCount;0<=--c;)if(this.m=a.measurements.get(c),this.m.isVisible&&this.m.$isValid&&!(1==(this.count=this.m.count)&&-2147483648==this.m.traceX))this.getPoints(),this.colix=this.m.colix,0==this.colix&&(this.colix=a.colix),0==this.colix&&(this.colix=this.vwr.cm.colixBackgroundContrast),
this.labelColix=this.m.labelColix,0==this.labelColix?this.labelColix=this.vwr.cm.colixBackgroundContrast:-1==this.labelColix&&(this.labelColix=this.colix),this.g3d.setC(this.colix),this.colixA=this.colixB=this.colix,this.renderMeasurement(b);return!1});f(c$,"getPoints",function(){for(var a=this.count;0<=--a;){var b=this.m.getAtomIndex(a+1),b=0<=b&&this.modulating?this.getModAtom(b):this.m.getAtom(a+1);0>b.sD&&(this.tm.transformPtScr(b,this.pt0i),b.sX=this.pt0i.x,b.sY=this.pt0i.y,b.sZ=this.pt0i.z);
this.p[a]=b}this.modulating&&this.m.refresh(this.p)});f(c$,"getModAtom",function(a){var b=Integer.$valueOf(a),c=this.mpts.get(b);null!=c&&(b=null);var d=this.ms.getModulation(a);null==d?c=this.ms.at[a]:(null==c&&(c=new JU.Point3fi),c.setT(this.ms.at[a]),this.vwr.tm.vibrationOn&&this.vwr.tm.getVibrationPoint(d,c,NaN),c.sD=-1);null!=b&&this.mpts.put(b,c);return c},"~N");f(c$,"renderMeasurement",function(a){a=a?this.m.getString():null;null!=a&&(0==a.length?a=null:null!=this.m.text&&(this.m.text.setText(a),
this.m.text.colix=this.labelColix));0==this.m.mad?(this.dotsOrDashes=!1,this.mad=this.mad0):(this.mad=this.m.mad,this.dotsOrDashes=!0,this.dashDots=0>this.mad?null:J.render.FontLineShapeRenderer.ndots);switch(this.count){case 1:this.drawLine(this.p[0].sX,this.p[0].sY,this.p[0].sZ,this.m.traceX,this.m.traceY,this.p[0].sZ,this.mad);break;case 2:this.renderDistance(a,this.p[0],this.p[1]);break;case 3:this.renderAngle(a,this.p[0],this.p[1],this.p[2]);break;case 4:this.renderTorsion(a,this.p[0],this.p[1],
this.p[2],this.p[3])}this.p[0]=this.p[1]=this.p[2]=this.p[3]=null},"~B");f(c$,"renderDistance",function(a,b,c){if(null!=(this.tickInfo=this.m.tickInfo))this.drawLine(b.sX,b.sY,b.sZ,c.sX,c.sY,c.sZ,this.mad),this.tickA=b,this.tickB=c,null==this.tickAs&&(this.tickAs=new JU.P3,this.tickBs=new JU.P3),this.tickAs.set(b.sX,b.sY,b.sZ),this.tickBs.set(c.sX,c.sY,c.sZ),this.drawTicks(this.mad,null!=a);else{var d=b.sZ-b.sD-10,e=c.sZ-c.sD-10,f=this.drawLine(b.sX,b.sY,d,c.sX,c.sY,e,this.mad);if(null!=a){0<this.mad&&
(f<<=1);d=this.m.inFront?Math.min(d,e)-10:m((d+e)/2);1>d&&(d=1);var e=m((b.sX+c.sX)/2),h=m((b.sY+c.sY)/2);null==this.m.text?(this.g3d.setC(this.labelColix),this.drawString(e,h,d,f,this.doJustify&&0<(e-b.sX)*(h-b.sY),!1,!0,this.doJustify?0:2147483647,a)):(this.atomPt.ave(b,c),this.atomPt.sX=m((b.sX+c.sX)/2),this.atomPt.sY=m((b.sY+c.sY)/2),this.renderLabelOrMeasure(this.m.text,a))}}},"~S,JU.Point3fi,JU.Point3fi");f(c$,"renderAngle",function(a,b,c,d){var e=c.sD+10,f=b.sZ-b.sD-10,h=c.sZ-e,k=d.sZ-d.sD-
10;b=this.drawLine(b.sX,b.sY,f,c.sX,c.sY,h,this.mad);b+=this.drawLine(c.sX,c.sY,h,d.sX,d.sY,k,this.mad);if(null!=a)if(b=m((b+1)/2),175<this.m.value)null==this.m.text?(e=m(Math.floor(5*this.imageFontScaling)),this.g3d.setC(this.labelColix),this.drawString(c.sX+e,c.sY-e,h,b,!1,!1,!1,this.doJustify?0:2147483647,a)):(this.atomPt.setT(c),this.renderLabelOrMeasure(this.m.text,a));else{this.m.isTainted()&&(d=JU.Measure.computeAngle(this.p[0],this.p[1],this.p[2],this.vectorT2,this.vectorT3,!1),this.vectorT.cross(this.vectorT2,
this.vectorT3),this.m.renderAxis=JU.A4.new4(this.vectorT.x,this.vectorT.y,this.vectorT.z,d),this.vectorT2.normalize(),this.vectorT2.scale(0.5),this.m.renderArc=JU.P3.newP(this.vectorT2));null==this.aaT&&(this.aaT=new JU.A4,this.matrixT=new JU.M3);var j=m(Math.floor(64*(this.m.renderAxis.angle/6.283185307179586)));d=this.m.renderAxis.angle/j;this.aaT.setAA(this.m.renderAxis);for(var l=m(j/2);0<=--j;){this.aaT.angle=j*d;this.pointT.setT(this.m.renderArc);this.matrixT.setAA(this.aaT).rotate(this.pointT);
this.pointT.add(c);var n=this.tm.transformPt(this.pointT),p=n.z-e;0>p&&(p=0);this.g3d.drawPixel(n.x,n.y,p);j==l&&(this.pointT.setT(this.m.renderArc),this.pointT.scale(1.1),this.matrixT.rotate(this.pointT),this.pointT.add(c),this.tm.transformPt(this.pointT),p=this.m.inFront?Math.min(Math.min(f,h),k):n.z-e,1>p&&(p=1),null==this.m.text?(this.g3d.setC(this.labelColix),this.drawString(n.x,n.y,p,b,n.x<c.sX,!1,!1,this.doJustify?c.sY:2147483647,a)):(this.atomPt.setT(this.pointT),this.renderLabelOrMeasure(this.m.text,
a)))}}},"~S,JU.Point3fi,JU.Point3fi,JU.Point3fi");f(c$,"renderTorsion",function(a,b,c,d,e){var f=b.sZ-b.sD-10,h=c.sZ-c.sD-10,j=d.sZ-d.sD-10,n=e.sZ-e.sD-10,l=this.drawLine(b.sX,b.sY,f,c.sX,c.sY,h,this.mad),l=l+this.drawLine(c.sX,c.sY,h,d.sX,d.sY,j,this.mad),l=l+this.drawLine(d.sX,d.sY,j,e.sX,e.sY,n,this.mad);null!=a&&(f=this.m.inFront?Math.min(Math.min(Math.min(f,h),j),n):m((f+h+j+n)/4),1>f&&(f=1),l/=3,null==this.m.text?(this.g3d.setC(this.labelColix),this.drawString(m((b.sX+c.sX+d.sX+e.sX)/4),m((b.sY+
c.sY+d.sY+e.sY)/4),f,l,!1,!1,!1,this.doJustify?0:2147483647,a)):(this.atomPt.add2(b,c),this.atomPt.add(d),this.atomPt.add(e),this.atomPt.scale(0.25),this.renderLabelOrMeasure(this.m.text,a)))},"~S,JU.Point3fi,JU.Point3fi,JU.Point3fi,JU.Point3fi");f(c$,"renderPendingMeasurement",function(){try{this.getPoints()}catch(a){if(C(a,Exception)){this.shape.mPending=null;return}throw a;}var b=-2147483648==this.m.traceX;this.g3d.setC(this.labelColix=b?this.vwr.cm.colixRubberband:2==this.count?20:23);if(this.m.haveTarget)this.renderMeasurement(b);
else{b=this.p[this.count-1];1<this.count&&this.renderMeasurement(!1);var c=b.sZ-b.sD-10,d=this.vwr.getCursorX(),e=this.vwr.getCursorY();this.g3d.isAntialiased()&&(d<<=1,e<<=1);this.drawLine(b.sX,b.sY,c,d,e,c,this.mad)}});h(c$,"drawLine",function(a,b,c,d,e,f,h){h=j(20<=h&&1!=this.exportType?this.vwr.tm.scaleToScreen(m((c+f)/2),h):h);if(this.dotsOrDashes&&(null==this.dashDots||this.dashDots===J.render.FontLineShapeRenderer.ndots))this.width=h;return this.drawLine2(a,b,c,d,e,f,h)},"~N,~N,~N,~N,~N,~N,~N")});
r("J.render");s(["J.render.LabelsRenderer"],"J.render.EchoRenderer",["JM.Atom","J.render.TextRenderer","JU.C","$.Txt"],function(){c$=z(J.render,"EchoRenderer",J.render.LabelsRenderer);h(c$,"render",function(){if(this.vwr.isPreviewOnly)return!1;var a=this.shape;this.sppm=this.vwr.getBoolean(603979845)?1E4*this.vwr.getScalePixelsPerAngstrom(!0):0;this.imageFontScaling=this.vwr.imageFontScaling;for(var b=!1,c,a=a.objects.values().iterator();a.hasNext()&&((c=a.next())||1);)if(c.visible&&!c.hidden&&(!n(c.pointerPt,
JM.Atom)||c.pointerPt.checkVisible())){4==c.valign&&(this.tm.transformPtScr(c.xyz,this.pt0i),c.setXYZs(this.pt0i.x,this.pt0i.y,this.pt0i.z,this.pt0i.z));if(null!=c.pymolOffset)c.getPymolScreenOffset(c.xyz,this.pt0i,this.zSlab,this.pTemp,this.sppm);else if(2147483647!=c.movableZPercent){var d=this.vwr.tm.zValueFromPercent(c.movableZPercent%1E3);4==c.valign&&1E3<=Math.abs(c.movableZPercent)&&(d=this.pt0i.z-this.vwr.tm.zValueFromPercent(0)+d);c.setZs(d,d)}null==c.pointerPt?c.pointer=0:(c.pointer=1,this.tm.transformPtScr(c.pointerPt,
this.pt0i),c.atomX=this.pt0i.x,c.atomY=this.pt0i.y,c.atomZ=this.pt0i.z,-2147483648==c.zSlab&&(c.zSlab=1));J.render.TextRenderer.render(c,this.g3d,this.sppm,this.imageFontScaling,!1,null,this.xy)&&(1==c.valign&&12==c.align)&&(this.vwr.noFrankEcho=!1);if(JU.C.renderPass2(c.bgcolix)||JU.C.renderPass2(c.colix))b=!0}if(!this.isExport&&(c=this.vwr.getFrameTitle(),null!=c&&0<c.length&&this.g3d.setC(this.vwr.cm.colixBackgroundContrast))){if(0<=c.indexOf("%{")||0<=c.indexOf("@{"))c=JU.Txt.formatText(this.vwr,
c);this.renderFrameTitle(c)}return b});f(c$,"renderFrameTitle",function(a){this.vwr.gdata.setFontFid(this.vwr.gdata.getFontFidFS("arial",j(24*this.imageFontScaling)));var b=m(Math.floor(this.vwr.getScreenHeight()*(this.g3d.isAntialiased()?2:1)-10*this.imageFontScaling)),c=m(Math.floor(5*this.imageFontScaling));this.g3d.drawStringNoSlab(a,null,c,b,0,0)},"~S")});r("J.render");s(["J.render.ShapeRenderer"],"J.render.HoverRenderer",["JU.P3","J.render.TextRenderer","JU.Txt"],function(){c$=u(function(){this.ptTemp=
this.tempXY=null;t(this,arguments)},J.render,"HoverRenderer",J.render.ShapeRenderer);w(c$,function(){this.tempXY=v(3,0)});h(c$,"render",function(){if(this.tm.isNavigating())return!1;null==this.ptTemp&&(this.ptTemp=new JU.P3);var a=this.shape,b=this.g3d.isAntialiased(),c=a.hoverText,d;if(0<=a.atomIndex){var e=this.ms.at[a.atomIndex];d=null!=a.specialLabel?a.specialLabel:null!=a.atomFormats&&null!=a.atomFormats[a.atomIndex]?this.vwr.ms.getLabeler().formatLabel(this.vwr,e,a.atomFormats[a.atomIndex],
this.ptTemp):null!=a.labelFormat?this.vwr.ms.getLabeler().formatLabel(this.vwr,e,this.fixLabel(e,a.labelFormat),this.ptTemp):null;if(null==d)return!1;c.setXYZs(e.sX,e.sY,1,-2147483648)}else if(null!=a.text)d=a.text,c.setXYZs(a.xy.x,a.xy.y,1,-2147483648);else return!0;if(null!=this.vwr&&(0<=d.indexOf("%{")||0<=d.indexOf("@{")))d=JU.Txt.formatText(this.vwr,d);c.setText(d);J.render.TextRenderer.render(c,this.g3d,0,b?2:1,!1,null,this.tempXY);return!0});f(c$,"fixLabel",function(a,b){return null==b?null:
this.vwr.ms.isJmolDataFrameForModel(a.mi)&&b.equals("%U")?"%W":b},"JM.Atom,~S")})})(Clazz,Clazz.getClassName,Clazz.newLongArray,Clazz.doubleToByte,Clazz.doubleToInt,Clazz.doubleToLong,Clazz.declarePackage,Clazz.instanceOf,Clazz.load,Clazz.instantialize,Clazz.decorateAsClass,Clazz.floatToInt,Clazz.floatToLong,Clazz.makeConstructor,Clazz.defineEnumConstant,Clazz.exceptionOf,Clazz.newIntArray,Clazz.defineStatics,Clazz.newFloatArray,Clazz.declareType,Clazz.prepareFields,Clazz.superConstructor,Clazz.newByteArray,
Clazz.declareInterface,Clazz.p0p,Clazz.pu$h,Clazz.newShortArray,Clazz.innerTypeInstance,Clazz.isClassDefined,Clazz.prepareCallback,Clazz.newArray,Clazz.castNullAs,Clazz.floatToShort,Clazz.superCall,Clazz.decorateAsType,Clazz.newBooleanArray,Clazz.newCharArray,Clazz.implementOf,Clazz.newDoubleArray,Clazz.overrideConstructor,Clazz.clone,Clazz.doubleToShort,Clazz.getInheritedLevel,Clazz.getParamsType,Clazz.isAF,Clazz.isAB,Clazz.isAI,Clazz.isAS,Clazz.isASS,Clazz.isAP,Clazz.isAFloat,Clazz.isAII,Clazz.isAFF,
Clazz.isAFFF,Clazz.tryToSearchAndExecute,Clazz.getStackTrace,Clazz.inheritArgs,Clazz.alert,Clazz.defineMethod,Clazz.overrideMethod,Clazz.declareAnonymous,Clazz.cloneFinals);
