(function(ca,da,ea,fa,ga,ha,T,O,U,W,X,K,Y,Z,ia,R,P,S,$,ja,aa,ka,la,ma,na,oa,pa,E,qa,ra,sa,ta,ua,va,wa,xa,ya,za,Aa,Ba,Ca,Da,Ea,Fa,Ga,Ha,Ia,Ja,Ka,La,Ma,Na,Oa,Pa,Qa,p,ba){T("JS");U(null,"JS.ScriptExt",["JU.AU"],function(){var k=X(function(){this.e=this.vwr=null;this.chk=!1;this.st=null;this.slen=0;W(this,arguments)},JS,"ScriptExt",null);p(k,"init",function(a){this.e=a;this.vwr=this.e.vwr;return this},"~O");p(k,"atomExpressionAt",function(a){return this.e.atomExpressionAt(a)},"~N");p(k,"checkLength",
function(a){this.e.checkLength(a)},"~N");p(k,"error",function(a){this.e.error(a)},"~N");p(k,"invArg",function(){this.e.invArg()});p(k,"invPO",function(){this.error(23)});p(k,"getShapeProperty",function(a,c){return this.e.getShapeProperty(a,c)},"~N,~S");p(k,"paramAsStr",function(a){return this.e.paramAsStr(a)},"~N");p(k,"centerParameter",function(a){return this.e.centerParameter(a,null)},"~N");p(k,"floatParameter",function(a){return this.e.floatParameter(a)},"~N");p(k,"getPoint3f",function(a,c){return this.e.getPoint3f(a,
c,!0)},"~N,~B");p(k,"intParameter",function(a){return this.e.intParameter(a)},"~N");p(k,"isFloatParameter",function(a){switch(this.e.tokAt(a)){case 2:case 3:return!0}return!1},"~N");p(k,"setShapeProperty",function(a,c,b){this.e.setShapeProperty(a,c,b)},"~N,~S,~O");p(k,"showString",function(a){this.e.showString(a)},"~S");p(k,"stringParameter",function(a){return this.e.stringParameter(a)},"~N");p(k,"getToken",function(a){return this.e.getToken(a)},"~N");p(k,"tokAt",function(a){return this.e.tokAt(a)},
"~N");p(k,"setShapeId",function(a,c,b){b&&this.invArg();c=this.e.setShapeNameParameter(c).toLowerCase();this.setShapeProperty(a,"thisID",c);return c},"~N,~N,~B");p(k,"getColorTrans",function(a,c,b,f){b=3.4028235E38;1765808134!=a.theTok&&--c;switch(this.tokAt(c+1)){case 603979967:c++;b=this.isFloatParameter(c+1)?a.getTranslucentLevel(++c):this.vwr.getFloat(570425353);break;case 1073742074:c++,b=0}a.isColorParam(c+1)?f[0]=a.getArgbParam(++c):1073742333==this.tokAt(c+1)?(f[0]=0,a.iToken=c+1):3.4028235E38==
b?this.invArg():f[0]=-2147483648;return b},"JS.ScriptEval,~N,~B,~A");p(k,"finalizeObject",function(a,c,b,f,e,d,h,j){e&&this.setShapeProperty(a,"set",d);-2147483648!=c&&this.e.setShapePropertyBs(a,"color",Integer.$valueOf(c),j);3.4028235E38!=b&&this.e.setShapeTranslucency(a,"","translucent",b,j);0!=f&&this.setShapeProperty(a,"scale",Integer.$valueOf(f));0>h&&(h=-1-h,this.setShapeProperty(a,"token",Integer.$valueOf(1073742018)),this.setShapeProperty(a,"token",Integer.$valueOf(1073742046)));0<h&&(this.e.setMeshDisplayProperty(a,
h,0)||this.invArg())},"~N,~N,~N,~N,~B,~O,~N,JU.BS");p(k,"getIntArray2",function(a){a=this.e.getToken(a).getList();for(var c=JU.AU.newInt2(a.size()),b=c.length;0<=--b;){var f=a.get(b).getList();null==f&&this.invArg();c[b]=P(f.size(),0);for(var e=c[b].length;0<=--e;)c[b][e]=f.get(e).intValue}return c},"~N");p(k,"getAllPoints",function(a,c){var b=null,f=null;try{switch(this.e.tokAt(a)){case 7:b=this.e.getPointArray(a,-1,!1);break;case 12290:case 10:case 1073742325:f=this.atomExpressionAt(a)}null==b&&
(null==f&&(f=this.vwr.getAllAtoms()),b=this.bsToArray(f))}catch(e){if(!R(e,Exception))throw e;}(null==b||b.length<c)&&this.invArg();return b},"~N,~N");p(k,"bsToArray",function(a){for(var c=Array(a.cardinality()),b=a.nextSetBit(0),f=0;0<=b;b=a.nextSetBit(b+1))c[f++]=this.vwr.ms.at[b];return c},"JU.BS")});T("JS");U(["JS.ScriptExt"],"JS.CmdExt","java.util.Hashtable JU.AU $.BS $.Base64 $.Lst $.M3 $.M4 $.Measure $.P3 $.P4 $.PT $.Quat $.SB $.V3 J.api.Interface J.atomdata.RadiusData J.c.STER $.VDW J.i18n.GT JM.AtomCollection $.LabelToken $.Measurement $.Text JS.SV $.ScriptCompiler $.ScriptError $.ScriptEval $.ScriptInterruption $.ScriptMathProcessor $.T JU.BSUtil $.BoxInfo $.C $.Edge $.Elements $.Escape $.Logger $.Parser $.Point3fi $.SimpleUnitCell JV.FileManager $.JC $.StateManager $.Viewer".split(" "),
function(){var k=$(JS,"CmdExt",JS.ScriptExt);Z(k,function(){aa(this,JS.CmdExt,[])});ba(k,"dispatch",function(a,c,b){this.chk=this.e.chk;this.slen=this.e.slen;this.st=b;switch(a){case 1073741866:b[0].value=this.prepareBinaryOutput(b[0]);break;case 4098:this.assign(!1);break;case 134221829:this.cache();break;case 4102:this.calculate();break;case 4103:this.capture();break;case 4105:this.centerAt();break;case 134221831:this.compare();break;case 528395:this.console();break;case 4106:this.connect(1);break;
case 1094717448:this.configuration();break;case 134221834:this.data();break;case 1613238294:this.connect(0);break;case 4120:this.image();break;case 4122:this.invertSelected();break;case 4124:this.macro();break;case 4125:this.mapProperty();break;case 4126:this.minimize(!1);break;case 603983903:this.modelkit();break;case 1275072532:this.modulation();break;case 4130:this.mutate();break;case 4131:this.navigate();break;case 4133:case 134221850:case 4138:this.plot(b);break;case 134222350:this.show();break;
case 528443:this.stereo();break;case 1814695966:this.unitcell(c?2:1,!1);break;case 134221856:return this.write(c?b:null);case 6:this.measure();break;case 21:this.polyhedra();break;case 20:this.ellipsoid();break;case 4:this.struts()}return null},"~N,~B,~A");p(k,"macro",function(){if(!this.chk){var a=this.e.optParameterAsString(1);if(0==a.length)this.showString(this.vwr.getMacro(null));else{var c=this.vwr.getMacro(a);null==c?this.showString("macro "+a+" could not be found. Current macros include:\n"+
this.vwr.getMacro(null)):(this.showString("running "+c),this.e.cmdScript(4124,c,null,null))}}});p(k,"evalParallel",function(a,c){this.chk=this.e.chk;this.slen=this.e.slen;var b=(new JS.ScriptEval).setViewer(this.vwr);b.historyDisabled=!0;b.compiler=new JS.ScriptCompiler(this.vwr);b.sm=c;try{b.restoreScriptContext(a,!0,!1,!1),b.setAllowJSThreads(!1),b.dispatchCommands(!1,!1,!1)}catch(f){if(R(f,Exception))return this.e.vwr.setStringProperty("_errormessage",""+f),null==b.thisContext&&(JU.Logger.error("Error evaluating context "+
f),f.printStackTrace()),!1;throw f;}return!0},"JS.ScriptContext,JV.ShapeManager");p(k,"getBitsetIdent",function(a,c,b,f,e,d){return this.getBitsetIdentFull(a,c,f,e,d,null)},"JU.BS,~S,~O,~B,~N,~B");p(k,"getBitsetIdentFull",function(a,c,b,f,e,d){var h=!O(a,"JM.BondSet");h?null==c?c=this.vwr.getStandardLabelFormat(0):0==c.length&&(c="%[label]"):null!=c&&0==c.length?c="[%a1 #%i1] %4.3LENGTH [%a2 #%i2] #%#":"%U".equals(c)&&(c="");var j=null==c?-1:c.indexOf("%"),g=2147483647!=f;if(null==a||this.chk||h&&
0>j)return null==c&&(c=""),e?E(-1,[c]):c;var j=this.vwr.ms,m=0;null==JS.CmdExt.labeler&&(JS.CmdExt.labeler=j.getLabeler());b=h||!b?null:a.getAssociatedAtoms(j);var n=null==c||0==c.length,q=h||n?null:JS.CmdExt.labeler.getBondLabelValues();c=n?null:h?JS.CmdExt.labeler.compile(this.vwr,c,"\x00",null):JS.CmdExt.labeler.compile(this.vwr,c,"\u0001",q);var t=g?1:a.cardinality(),l=null!=d;l||(d=Array(t));var C=new JU.P3;for(f=g?f:a.nextSetBit(0);0<=f;f=a.nextSetBit(f+1)){var x;h?x=n?j.at[f].getInfo():JS.CmdExt.labeler.formatLabelAtomArray(this.vwr,
j.at[f],c,"\x00",b,C):(x=j.bo[f],x=n?x.getIdentity():JS.CmdExt.labeler.formatLabelBond(this.vwr,x,c,q,b,C));x=JU.PT.formatStringI(x,"#",m+1);d[l?f:m]=x;m++;if(g)break}return 1==t&&!e?d[0]:d},"JU.BS,~S,~B,~N,~B,~A");p(k,"getLoadSymmetryParams",function(a,c,b){var f=this.e;this.chk=f.chk;this.slen=f.slen;var e=!1,d=null,h=this.tokAt(a);if(1073742332==h||8==h)d=f.getFractionalPoint(a),h=this.tokAt(a=f.iToken+1);switch(h){case 134217764:e=b.get("isEmptyLoad")===Boolean.TRUE;case 1073741938:case 1073742080:case 1094713350:case 1073742163:case 1073742114:case 1814695966:null==
d&&(d=JU.P3.new3(555,555,-1)),f.iToken=a-1}h=null;if(null!=d){b.put("lattice",d);a=f.iToken+1;c.append(" "+JU.SimpleUnitCell.escapeMultiplier(d));a=this.checkPacked(a,0,b,c);if(1094713350==this.tokAt(a)){b.put("centroid",Boolean.TRUE);c.append(" CENTROID");var j=0;this.isFloatParameter(a+1)&&(--a,j=1073742080);a=this.checkPacked(++a,j,b,c)}if(1073742163==this.tokAt(a)){c.append(" SUPERCELL ");if(f.isPoint3f(++a)){j=this.getPoint3f(a,!1);if(j.x!=K(j.x)||j.y!=K(j.y)||j.z!=K(j.z)||1>j.x||1>j.y||1>j.z)f.iToken=
a,this.invArg();a=f.iToken}else j=this.stringParameter(a);c.append(JU.Escape.e(j));b.put("supercell",j);a=this.checkPacked(++a,0,b,c)}j=0;1073742114==this.tokAt(a)&&(a++,j=this.floatParameter(a++),c.append(" range "+j));b.put("symmetryRange",Float.$valueOf(j));var j=null,g,m=-2147483648;134217764==this.tokAt(a)&&(++a,j=JU.PT.rep(this.paramAsStr(a++),"''",'"'),c.append(" spacegroup "+JU.PT.esc(j)),j.equalsIgnoreCase("ignoreOperators")?m=-999:(0==j.length?(g=this.vwr.getCurrentUnitCell(),null!=g&&(j=
g.getSpaceGroupName())):0<=j.indexOf(",")&&9>d.x&&(9>d.y&&0==d.z)&&(j+="#doNormalize=0"),b.put("spaceGroupName",j),m=-2));d=null;if(1814695966==this.tokAt(a)){++a;g=f.optParameterAsString(a);0==g.length?(g=this.vwr.getCurrentUnitCell(),null!=g&&(d=g.getUnitCellAsArray(!0),h=g.getCartesianOffset())):4==this.tokAt(a)?(d=S(6,0),JU.SimpleUnitCell.setAbc(g,d,null)):d=f.floatParameterSet(a,6,9);(null==d||6!=d.length&&9!=d.length)&&this.invArg();c.append(" unitcell [");for(a=0;a<d.length;a++)c.append((0==
a?"":" ")+d[a]);c.append("]");b.put("unitcell",d);-2147483648==m&&(m=-1);a=f.iToken+1}-2147483648!=m&&b.put("spaceGroupIndex",Integer.$valueOf(m));e&&null==d&&null!=j&&JU.PT.parseInt(j)}e=!1;null==h&&1073742066==this.tokAt(a)&&(h=this.getPoint3f(++a,!0),e=f.coordinatesAreFractional);null!=h&&(e?(h.setT(f.fractionalPoint),b.put("unitCellOffsetFractional",e?Boolean.TRUE:Boolean.FALSE),c.append(" offset {"+h.x+" "+h.y+" "+h.z+"/1}")):c.append(" offset "+JU.Escape.eP(h)),b.put("unitCellOffset",h),a=f.iToken+
1);return a},"~N,JU.SB,java.util.Map");p(k,"checkPacked",function(a,c,b,f){0==c&&(c=this.tokAt(a));switch(c){case 1073741938:b.put("packed",Boolean.TRUE);var e=null;c=this.tokAt(++a);switch(c){case 1812599299:case 1814695966:case 4:break;default:this.e.isArrayParameter(a)?(e=this.e.getPointArray(a,-1,!1),a=this.e.iToken):this.isFloatParameter(a)?(e=this.floatParameter(a),e=E(-1,[new JU.P3,JU.P3.new3(e,e,e)])):(e=[],--a)}a++;if(this.e.chk)break;switch(c){case 4:a--;case 1814695966:c=this.e.optParameterAsString(a++).toLowerCase();
if(JU.PT.isOneOf(c,";conventional;primitive;rhombohedral;trigonal;")||0<=c.indexOf(",")&&0<=c.indexOf("a")&&0<=c.indexOf("b")&&0<=c.indexOf("c"))return b.put("fillRange",c),f.append(' FILL UNITCELL "'+c+'"'),a;c=this.vwr.getCurrentUnitCell();if(null!=c){e=JU.BoxInfo.toOABC(c.getUnitCellVerticesNoOffset(),c.getCartesianOffset());break}case 1812599299:e=JU.BoxInfo.toOABC(this.vwr.ms.getBBoxVertices(),null)}switch(e.length){case 2:c=e[1];e=E(-1,[e[0],JU.P3.newP(e[0]),new JU.P3,new JU.P3]);e[1].x=c.x;
e[2].y=c.y;e[3].z=c.z;break;case 3:e=E(-1,[new JU.P3,e[0],e[1],e[2]]);break;case 4:break;default:e=E(-1,[new JU.P3,JU.P3.new3(10,0,0),JU.P3.new3(0,10,0),JU.P3.new3(0,0,10)])}b.put("fillRange",e);f.append(" FILL ["+e[0]+e[1]+e[2]+e[3]+"]");break;case 1073742080:c=NaN,this.isFloatParameter(++a)&&(c=this.floatParameter(a++)),this.e.chk||(b.put("packed",Boolean.TRUE),f.append(" PACKED"),Float.isNaN(c)||(b.put("packingRange",Float.$valueOf(c)),f.append(" "+c)))}return a},"~N,~N,java.util.Map,JU.SB");p(k,
"cache",function(){var a=this.tokAt(1),c=null,b=2;switch(a){case 1275069441:case 1073742119:c=this.e.optParameterAsString(b++);case 1073741882:this.checkLength(b);this.chk||("all".equals(c)&&(c=null),c=this.vwr.cacheFileByName(c,1275069441==a),this.showString(0>c?"cache cleared":c+" bytes "+(1275069441==a?" cached":" removed")));break;default:this.invArg()}});p(k,"calculate",function(){var a=!1,c=!1,b=null,f=null,e=this.e,d=-2147483648,d=-1;if(2<=(e.iToken=e.slen))switch(e.clearDefinedVariableAtomSets(),
this.getToken(1).tok){case 2:if(3!=this.intParameter(1)||!this.paramAsStr(2).equalsIgnoreCase("D"))break;0>this.vwr.am.cmi&&e.errorStr(30,"calculate 3D");b="load append $ filter '2D';select visible;center selected";e.optParameterAsString(3).equalsIgnoreCase("ZAP")&&(b+=";zap modelIndex="+Math.max(this.vwr.am.cmi,0));this.chk||e.runScript(b);return;case 1073741824:this.checkLength(2);break;case 134217764:e.iToken=1;b=2==this.slen?null:this.atomExpressionAt(2);e.checkLast(e.iToken);this.chk||e.showString(""+
this.vwr.findSpaceGroup(null,b,null,null,null,null,1));return;case 1086324752:e.iToken=1;b=2==this.slen?null:this.atomExpressionAt(2);e.checkLast(e.iToken);this.chk||e.showString(this.vwr.calculateChirality(b));return;case 1631586315:this.checkLength(2);if(this.chk)return;d=this.vwr.calculateFormalCharges(null);this.showString(J.i18n.GT.i(J.i18n.GT.$("{0} charges modified"),d));return;case 1075838996:this.checkLength(2);this.chk||this.vwr.ms.assignAromaticBondsBs(!0,null);return;case 1613238294:2!=
e.slen&&(b=(c=1639976963==this.tokAt(++e.iToken))?this.vwr.bsA():this.atomExpressionAt(e.iToken),!c&&1639976963!=this.tokAt(++e.iToken)&&(f=this.atomExpressionAt(e.iToken)));if(this.chk)return;d=this.vwr.autoHbond(b,f,!1);-2147483648!=d&&e.report(J.i18n.GT.i(J.i18n.GT.$("{0} hydrogen bonds"),Math.abs(d)),!1);return;case 1612709900:a=this.tokAt(2);(c=1073742335==a)?e.iToken++:528443==a&&e.iToken++;b=this.slen==e.iToken+1?null:this.atomExpressionAt(e.iToken+1);null==b&&528443==a&&(b=this.vwr.getAtomBitSet("_C & connected(3) & !connected(double)"));
e.checkLast(e.iToken);this.chk||(this.vwr.addHydrogens(b,0),c&&(null==b&&(b=this.vwr.bsA()),this.vwr.makeConnections(0.1,1E8,515,1073742025,b,b,null,!1,!1,0),this.vwr.ms.assignAromaticBondsBs(!0,null)));return;case 1111492619:e.iToken=1;b=2==this.slen?null:this.atomExpressionAt(2);e.checkLast(e.iToken);this.chk||e.getPartialCharges(b);return;case 1088421903:case 1275068447:this.chk||(1275203608==this.tokAt(2)?(a=4==this.tokAt(3)?this.stringParameter(3):null,b=null!=a||3==this.slen?null:this.atomExpressionAt(3),
b=E(-1,[a,null,b]),this.showString(e.getShapePropertyData(21,"symmetry",b)?b[1]:"")):(b=2==this.slen?this.vwr.bsA():this.atomExpressionAt(2),this.showString(this.vwr.ms.calculatePointGroup(b))));return;case 1111490574:this.checkLength(2);this.chk||(this.vwr.calculateStraightness(),this.vwr.addStateScript("set quaternionFrame '"+this.vwr.getQuaternionFrame()+"'; calculate straightness",!1,!0));return;case 1639976963:b=4>this.slen||this.isFloatParameter(3)?null:this.atomExpressionAt(2);switch(this.tokAt(++e.iToken)){case 4138:break;
case 1111490587:if(this.chk)return;e.showString(this.vwr.getAnnotationParser(!0).calculateDSSRStructure(this.vwr,b));return;case 1073741915:c=!0;d=this.slen==e.iToken+1?-1:K(this.floatParameter(++e.iToken));break;case 0:c=this.vwr.getBoolean(603979826);break;default:this.invArg()}this.chk||this.showString(this.vwr.calculateStructures(b,c,!0,d));return;case 659482:b=e.iToken+1<this.slen?this.atomExpressionAt(++e.iToken):null;f=e.iToken+1<this.slen?this.atomExpressionAt(++e.iToken):null;this.checkLength(++e.iToken);
this.chk||(d=this.vwr.calculateStruts(b,f),0<d&&(this.setShapeProperty(1,"type",Integer.$valueOf(32768)),e.setShapePropertyBs(1,"color",Integer.$valueOf(16777215),null),e.setShapeTranslucency(1,"","translucent",0.5,null),this.setShapeProperty(1,"type",Integer.$valueOf(1023))),this.showString(J.i18n.GT.i(J.i18n.GT.$("{0} struts added"),d)));return;case 2097180:a=!0;case 1111490575:c=!1;switch(this.tokAt(2)){case 134217759:e.iToken++;break;case 0:c=!a;break;case 1073741952:c=!0;e.iToken++;break;default:c=
!0}b=e.iToken+1<this.slen?this.atomExpressionAt(++e.iToken):this.vwr.bsA();this.checkLength(++e.iToken);this.chk||this.vwr.calculateSurface(b,c?3.4028235E38:-1);return}e.errorStr2(53,"CALCULATE","3D? aromatic? hbonds? hydrogen? formalCharge? partialCharge? pointgroup? straightness? structure? struts? surfaceDistance FROM? surfaceDistance WITHIN?")});p(k,"capture",function(){if(!this.chk&&!this.vwr.allowCapture())this.showString("Cannot capture on this platform");else{var a=this.vwr.captureParams,
c=null==a?"GIF":a.get("type"),b=0,f=0,e=this.e.slen,d="",h=1073742070!=this.vwr.am.animationReplayMode,j=1,g=this.tokAt(j),m=603979967==g;m&&(g=this.tokAt(++j));var n=null;switch(0==g?g=102409:g){case 4:d=this.e.optParameterAsString(j++);if(0==d.length){f=102409;break}c=d.toLowerCase();c.endsWith(".gift")||c.endsWith(".pngt")?(m=!0,d=d.substring(0,d.length-1),c=d.toLowerCase()):!c.endsWith(".gif")&&!c.contains(".png")&&(d+=".gif");c.endsWith(".png")?(c.endsWith("0.png")||(d=d.substring(0,d.length-
4)+"0000.png"),c="PNG"):c="GIF";m&&(c+="T");g=d.indexOf("0000.");g=0>g||g!=d.lastIndexOf(".")-4;f=!1;528411==this.tokAt(j)&&(h=!0,this.tokAt(++j));switch(this.tokAt(j)){case 134222850:n=this.stringParameter(++j);break;case 1073742129:f=!0;case 1611141175:a="y";h=!0;j++;f?(j<e&&2!=this.tokAt(j)&&(a=this.e.optParameterAsString(j++).toLowerCase()),n="rotate Y 10 10;rotate Y -10 -10;rotate Y -10 -10;rotate Y 10 10",e=j<e?this.intParameter(j++):5,n=0>e?JU.PT.rep(n,"10;",""+-e+";"):JU.PT.rep(n,"10",""+
e)):(j<e&&(a=this.e.optParameterAsString(j++).toLowerCase()),n="rotate Y 360 30;");if(this.chk)return;this.vwr.setNavigationMode(!1);if(""===a||0>"xyz".indexOf(a))a="y";n=JU.PT.rep(n,"Y",a);break;case 3:case 2:b=this.floatParameter(j++)}if(this.chk)return;if(null!=n){n="set waitformoveto true;"+n+";set waitformoveto "+this.vwr.g.waitForMoveTo;n="capture "+(m?"transparent ":"")+JU.PT.esc(d)+(h?" LOOP;":";")+n+";capture end;";this.e.cmdScript(0,null,n,null);return}f=1073742031;a=new java.util.Hashtable;
m=this.vwr.getInt(553648132);g&&(a.put("streaming",Boolean.TRUE),h||this.showString(J.i18n.GT.o(J.i18n.GT.$("Note: Enable looping using the LOOP keyword just after the file name or {0}"),E(-1,["ANIMATION MODE LOOP"]))),this.showString(J.i18n.GT.o(J.i18n.GT.$("Animation delay based on: {0}"),E(-1,["ANIMATION FPS "+m]))));a.put("captureFps",Integer.$valueOf(m));break;case 102409:case 1073741874:null!=a&&a.put("captureSilent",Boolean.TRUE);case 1073742335:case 1073742334:this.checkLength(-2);f=g;break;
default:this.invArg()}this.chk||null==a||(a.put("type",c),c=Integer.$valueOf(this.vwr.getBackgroundArgb()),a.put("backgroundColor",c),a.put("fileName",d),a.put("quality",Integer.$valueOf(-1)),a.put("endTime",Long.$valueOf(0>=b?-1:System.currentTimeMillis()+Y(1E3*b))),a.put("captureMode",JS.T.nameOf(f).toLowerCase()),a.put("captureLooping",h?Boolean.TRUE:Boolean.FALSE),b=this.vwr.processWriteOrCapture(a),null==b&&(b="canceled"),JU.Logger.info(b))}});p(k,"centerAt",function(){var a=this.getToken(1).tok;
switch(a){case 1073741826:case 96:case 1812599299:break;default:this.invArg()}var c=JU.P3.new3(0,0,0);5==this.slen?(c.x=this.floatParameter(2),c.y=this.floatParameter(3),c.z=this.floatParameter(4)):this.e.isCenterParameter(2)?(c=this.centerParameter(2),this.e.checkLast(this.e.iToken)):this.checkLength(2);!this.chk&&!this.vwr.isJmolDataFrame()&&this.vwr.tm.setCenterAt(a,c)});p(k,"compare",function(){var a=this.e,c=!1,b=!1,f=!1,e=!1,d=!1,h=null,j=null,g=null,m=null,n=null,q=null;a.iToken=0;var t=this.isFloatParameter(1)?
this.floatParameter(++a.iToken):NaN,l=null,C=null,x=null,e=0;if(4115==this.tokAt(1))C=this.vwr.bsA();else if(C=this.atomExpressionAt(1),a.isArrayParameter(++a.iToken))l=a.getPointArray(a.iToken,-1,!1);else if(1153433601!=(e=this.tokAt(a.iToken))&&4115!=e)x=this.atomExpressionAt(a.iToken);var k=null,s=!1,p=!1,u=null,y=JU.BSUtil.copy(C);null!=x&&y.or(x);for(var r=null==l&&null!=x&&y.equals(C),y=r,z=1153433601==e,M=!1,w=a.iToken+1;w<this.slen;++w)switch(this.getToken(w).tok){case 4115:y=!0;null==x&&
(x=JU.BSUtil.copy(C));break;case 134218757:if(s=!0,e=this.tokAt(w+1),4!=e&&1275203608!=e){u="*";break}case 134218756:u=(p=1275203608==this.tokAt(++w))?"polyhedra":this.stringParameter(w);if(u.equalsIgnoreCase("polyhedra")||u.equalsIgnoreCase("polyhedron"))p=!0;break;case 1677721602:b=d=!0;u=this.paramAsStr(++w);u.equalsIgnoreCase("SMILES")&&(s=!0,1612709900==this.e.tokAt(w+1)?(u="H",w++):u="*");break;case 3:case 2:t=Math.abs(this.floatParameter(w));break;case 268436992:break;case 2109448:k=this.atomExpressionAt(++w);
w=a.iToken;break;case 10:case 1073742325:null!=q&&this.invArg();g=this.atomExpressionAt(a.iToken);e=r?0:this.tokAt(a.iToken+1);m=null==l&&a.isArrayParameter(a.iToken+1)?null:10==e||1073742325==e?this.atomExpressionAt(++a.iToken):JU.BSUtil.copy(g);null!=k&&(g.and(k),null!=m&&m.and(k));null==m?(e=a.iToken,l=a.getPointArray(a.iToken+1,-1,!1),null==l?a.iToken=e:M=!0):null!=x&&m.and(x);null==n&&(n=new JU.Lst);n.addLast(E(-1,[g,null==m?l:m]));z&&(l=null);w=a.iToken;break;case 1275203608:s=p=!0;break;case 4125:break;
case 7:null!=n&&this.invArg();c=!0;h=a.getQuaternionArray(a.theToken.getList(),1073742001);this.getToken(++w);j=a.getQuaternionArray(a.theToken.getList(),1073742001);null==q&&(q=new JU.Lst);q.addLast(E(-1,[h,j]));break;case 1073742077:c=!0;break;case 1153433601:z=!0;c=!1;break;case 134217751:c=!1;break;case 528432:b=!0;break;case 4160:f=!0;break;default:this.invArg()}if(!this.chk){y&&(t=0);Float.isNaN(t)||0>t?t=1:!b&&!f&&(b=f=!0);e=0!=t;(z=!c&&null==u&&!p||null!=l)&&J.api.Interface.getInterface("JU.Eigen",
this.vwr,"script");null==n&&null==q&&(p&&null==k&&(k=this.vwr.getAtomBitSet("polyhedra")),null==k?(g=z?this.vwr.getAtomBitSet("spine"):new JU.BS,0>g.nextSetBit(0)?(g=C,m=x):(m=JU.BSUtil.copy(g),g.and(C),m.and(x))):(g=JU.BSUtil.copy(C),m=JU.BSUtil.copy(x),g.and(k),g.and(C),null!=m&&(m.and(k),m.and(x))),n=new JU.Lst,n.addLast(E(-1,[g,m])));r=null;if(y)for(var r=this.vwr.ms.getModelBS(C,!1),k=Array(r.cardinality()),w=0,H=r.nextSetBit(0);0<=H;H=r.nextSetBit(H+1),w++)k[w]=this.vwr.getModelUndeletedAtomsBitSet(H);
else r=JU.BSUtil.newAndSetBit(0),k=E(-1,[C]);for(var F=0,H=r.nextSetBit(0);F<k.length;F++,H=r.nextSetBit(H+1)){var C=k[F],v=S(2,0);if(y&&p&&0==F)x=C;else{var G=null,A=new JU.Lst,Q=null,N=y?new JU.Lst:n;if(!M)for(w=0;w<n.size();++w){var I=n.get(w);y&&N.addLast(I=E(-1,[JU.BSUtil.copy(I[0]),I[1]]));I[0].and(C)}var L=null,K=null;if(z){null!=l&&(N.clear(),N.addLast(E(-1,[g,l])));try{Q=this.vwr.getCenterAndPoints(N,!0)}catch(P){if(R(P,Exception))this.invArg();else throw P;}G=Q[0].length-1;for(w=1;w<=G;w++){A=
Q[0][w];I=Q[1][w];if(!O(A,"JM.Atom")||!O(I,"JM.Atom"))break;y||JU.Logger.info(" atom 1 "+A.getInfo()+"\tatom 2 "+I.getInfo())}G=JU.Measure.calculateQuaternionRotation(Q,v);w=Float.isNaN(v[1])?NaN:Math.round(100*v[0])/100;v=Float.isNaN(v[1])?NaN:Math.round(100*v[1])/100;this.showString("RMSD "+w+" --\x3e "+v+" Angstroms")}else if(c){if(null==q)for(w=0;w<N.size();w++){I=N.get(w);h=this.vwr.getAtomGroupQuaternions(I[0],2147483647);j=this.vwr.getAtomGroupQuaternions(I[1],2147483647);for(G=0;G<h.length&&
G<j.length;G++)A.addLast(j[G].div(h[G]))}else for(G=0;G<h.length&&G<j.length;G++)A.addLast(j[G].div(h[G]));v[0]=0;h=A.toArray(Array(A.size()));G=JU.Quat.sphereMean(h,v,1E-4);this.showString("RMSD = "+v[0]+" degrees")}else{w=new JU.M4;L=new JU.P3;if(null!=C&&null!=u&&("H".equals(u)||"*".equals(u)||"".equals(u)))try{u=this.vwr.getSmilesOpt(null==g?C:g,-1,-1,32768|("H".equals(u)?4096:0),null)}catch(V){if(R(V,Exception))a.evalError(V.getMessage(),null);else throw V;}if(d){var T;if(null==C||null==x||null==
(T=a.getSmilesExt().getFlexFitList(C,x,u,!s)))break;this.vwr.setDihedrals(T,null,1)}p?(v=JU.BS.copy(g),v.and(C),A=JU.BS.copy(m),A.and(x),v=a.getSmilesExt().mapPolyhedra(v.nextSetBit(0),A.nextSetBit(0),s,w)):(this.showString("COMPARE using "+(s?"SMILES ":"SMARTS ")+u),v=new JU.Lst,A=new JU.Lst,v=a.getSmilesExt().getSmilesCorrelation(null==g?C:g,null==m?x:m,u,v,A,w,null,!1,null,L,!1,32|(s?1:2)));if(Float.isNaN(v)){this.showString("structures do not match from "+C+" to "+x);break}f&&(K=new JU.V3,w.getTranslation(K));
b&&(G=new JU.M3,w.getRotationScale(G),G=JU.Quat.newM(G));this.showString("RMSD = "+v+" Angstroms");y&&(w=this.vwr.getV0abc(H,E(-1,[w])),null!=w&&this.vwr.ms.setModelCagePts(H,w,null))}null!=Q&&(L=Q[0][0]);null==L&&(Q=this.vwr.getCenterAndPoints(N,!0),L=Q[0][0]);N=new JU.P3;I=NaN;f&&(null==K&&(K=JU.V3.newVsub(Q[1][0],L)),I=1E10);if(b&&(null==G&&a.evalError("option not implemented",null),N.add2(L,G.getNormal()),I=G.getTheta(),0==I&&f))if(0.01<K.length())I=1E10;else if(y)continue;else b=f=e=!1;if(!Float.isNaN(I)&&
!Float.isNaN(N.x)&&(A=null,b&&(f&&0!=t)&&(v=this.vwr.ms.getAtomPointVector(C),w=JS.ScriptMathProcessor.getMatrix4f(G.getMatrix(),K),A=JU.Measure.transformPoints(v,w,L)),a.useThreads()||(e=!1),this.vwr.rotateAboutPointsInternal(a,L,N,I/t,I,e,C,K,A,null,null,!1)&&e&&a.isJS))throw new JS.ScriptInterruption(a,"compare",1);}}}});p(k,"configuration",function(){var a=null,c=this.chk?null:this.vwr.bsA();if(1==this.slen){if(this.chk)return;a=this.vwr.ms.setConformation(c);this.vwr.ms.addStateScript("select",
null,c,null,";configuration",!0,!1)}else{var c=-2147483648,b=null;4==this.tokAt(1)?c=-1E3-(this.stringParameter(this.e.checkLast(1))+" ").codePointAt(0):2==this.tokAt(1)?c=this.intParameter(this.e.checkLast(1)):(b=a=this.atomExpressionAt(1),c=4==this.tokAt(this.e.iToken)?-1E3-(this.stringParameter(this.e.checkLast(this.e.iToken+1))+" ").codePointAt(0):this.intParameter(this.e.checkLast(this.e.iToken+1)));if(this.chk)return;this.vwr.addStateScript("configuration "+(null==b?"":JU.Escape.eBS(a)+" ")+
c+";",!0,!1);a=this.vwr.ms.getConformation(this.vwr.am.cmi,c,!0,b)}this.setShapeProperty(1,"type",Integer.$valueOf(30720));this.e.setShapeSizeBs(1,0,a);this.vwr.autoHbond(a,a,!0);this.vwr.selectStatus(a,!1,0,!this.e.doReport(),!1)});p(k,"measure",function(){var a=this.e,c=null,b=0,f=null;if(2==this.slen)switch(this.tokAt(1)){case 1073742334:this.setShapeProperty(6,"hideAll",Boolean.TRUE);return;case 12291:this.chk||this.vwr.clearAllMeasurements();return;case 1113589787:this.chk||this.showMeasureCount(!0);
return}this.vwr.shm.loadShape(6);switch(this.tokAt(1)){case 134218756:var e=this.stringParameter(3==this.slen?2:4);if(this.chk)return;var d=this.vwr.ms.at,h=this.vwr.ms.ac,c=null;try{c=this.vwr.getSmilesMatcher().getCorrelationMaps(e,d,h,this.vwr.bsA(),2)}catch(j){if(R(j,Exception))a.evalError(j.getMessage(),null);else throw j;}if(null==c)return;this.setShapeProperty(6,"maps",c);return}switch(this.slen){case 2:switch(this.getToken(1).tok){case 0:case 1073742335:this.vwr.shm.loadShape(6);this.setShapeProperty(6,
"hideAll",Boolean.FALSE);return;case 1073742001:this.chk||a.showStringPrint(this.vwr.getMeasurementInfoAsString(),!1);return;case 4:this.setShapeProperty(6,"setFormats",this.stringParameter(1));return}a.errorStr(24,"ON, OFF, DELETE");break;case 3:switch(this.getToken(1).tok){case 12291:if(1073742327==this.getToken(2).tok)this.chk||this.vwr.clearAllMeasurements();else{var g=this.intParameter(2)-1;this.chk||this.vwr.deleteMeasurement(g)}return}}for(var m=0,n=0,q=-1,t=-1,l=-1,C=P(5,0),k=S(-1,[3.4028235E38,
3.4028235E38]),p=!1,s=!1,D=!1,u=!0,y=!1,r=null,z=null,e=268438018,E=d=null,w=h=null,H=new JU.Lst,y=new JU.BS,F=null,v=null,G=null,A=0,Q=0,N=NaN,I=null,g=1;g<this.slen;++g)switch(this.getToken(g).tok){default:this.error(15);break;case 1073741974:1!=g&&this.invArg();c=a.optParameterAsString(++g);continue;case 1073741824:a.errorStr(24,"ALL, ALLCONNECTED, DELETE");break;case 1275082241:e=1275082241;if(1073742327==this.tokAt(g+1)&&this.slen==g+2){this.chk||(this.vwr.setShapeProperty(6,"selectall",null),
this.showMeasureCount(!0));return}break;case 1113589787:(0<H.size()||0<A||null!=c)&&this.invArg();e=1275082241;if(this.chk)F=new JU.BS;else if(F=this.vwr.getShapeProperty(6,"selected"),0==F.cardinality())return;p=!0;break;case 268439040:134217736!=this.tokAt(g+1)&&this.invArg();g++;D=!0;break;case 1073741832:I=this.paramAsStr(++g).toLowerCase();break;case 134217736:case 1073741834:case 1073742327:s=1073741834==a.theTok;t=-1;p=!0;s&&D&&this.invArg();break;case 1765808134:b=JU.C.getColix(a.getArgbParam(++g));
g=a.iToken;break;case 1073742066:a.isPoint3f(++g)?(f=this.getPoint3f(g,!1),f=S(-1,[1,f.x,f.y,f.z,0,0,0])):f=a.floatParameterSet(g,7,7);g=a.iToken;break;case 1665140738:case 1073741917:Q=K((1665140738==a.theTok?2E3:1E3)*this.floatParameter(++g));null!=c&&0>=Q&&(Q=-1);break;case 3:null!=r&&this.invArg();u=p=!0;l=(l+1)%2;k[l]=this.floatParameter(g);break;case 12291:268438018!=e&&1275082241!=e&&this.invArg();e=12291;break;case 4114:var L=this.floatParameter(++g),T=this.paramAsStr(++g),U=this.paramAsStr(++g);
this.chk||(w=this.vwr.getFont3D(T,U,L));break;case 2:L=this.intParameter(g);if(p)u=!0,l=(l+1)%2,k[l]=L;else{t=this.vwr.ms.getFirstAtomIndexFromAtomNumber(L,this.vwr.getVisibleFramesBitSet());if(!this.chk&&0>t)return;null!=v&&this.invArg();4<(C[0]=++m)&&a.bad();C[m]=t}break;case 1094713359:q=this.intParameter(++g);break;case 1073742334:268438018!=e&&this.invArg();e=1073742334;break;case 1073742335:268438018!=e&&this.invArg();e=1073742335;break;case 1073742114:u=p=!0;t=-1;break;case 1073741989:case 1073741990:z=
Boolean.$valueOf(1073741989==a.theTok);p=!0;D=1073741990==a.theTok;break;case 1648363544:0<=l&&this.invArg();r=a.encodeRadiusParameter(g,!1,!0);if(null==r)return;r.values=k;g=a.iToken;p=D=!0;z=Boolean.$valueOf(!1);1==A&&(A++,m++,L=JU.BSUtil.copy(y),JU.BSUtil.invertInPlace(L,this.vwr.ms.ac),L.and(this.vwr.ms.getAtomsWithinRadius(5,y,!1,null,null)),H.addLast(L));break;case 12290:case 10:case 1073742325:A++;case 1073742332:case 8:case 1073742330:(0<=t||null!=F)&&this.invArg();m=Array(1);v=a.centerParameter(g,
m);if(O(m[0],"JU.BS")&&(v=y=m[0],!this.chk&&0==y.length()))return;O(v,"JU.P3")&&(m=new JU.Point3fi,m.setT(v),m.mi=q,v=m);4<(m=++n)&&a.bad();g=a.iToken;H.addLast(v);break;case 1715472409:E=this.paramAsStr(g);break;case 1073742188:N=this.floatParameter(++g);break;case 4:L=this.stringParameter(g);JM.Measurement.isUnits(L)||L.equals("default")?h=L:d=L;break;case 1073742164:G=a.tickParamAsStr(g,!1,!0,!0),g=a.iToken,e=12290}(null!=r&&(0<=l||2!=m)||1275082241!=e&&null==F&&2>m&&null==c&&(null==G||1==m))&&
a.bad();null!=d&&0!=d.indexOf(m+":")&&(d=m+":"+d);u&&k[1]<k[0]&&(k[1]=k[0],k[0]=3.4028235E38==k[1]?3.4028235E38:-200);if(!this.chk)if(y=null!=c&&null==v&&268438018==e,null!=v||null!=F||null!=G||y){null==r&&(r=new J.atomdata.RadiusData(k,0,null,null));null!=G&&(G.id="default");if(y)e=266284;else if(null!=v&&(null!=E||null!=d)&&268438018==e)e=12290;a=null;if(null!=w||null!=I||0!=b||null!=d&&(y||0<=d.indexOf("\n")))a=JM.Text.newMeasure(this.vwr,w,b);null!=a&&(a.pymolOffset=f,a.setAlignmentLCR(I));this.setShapeProperty(6,
"measure",this.vwr.newMeasurementData(c,H).set(e,null,r,E,d,h,G,s,D,z,p,Q,b,a,N,F));1275082241==e&&this.showMeasureCount(!1)}else switch(a=null==c?C:c,e){case 12291:this.setShapeProperty(6,"delete",a);break;case 1073742335:this.setShapeProperty(6,"show",a);break;case 1073742334:this.setShapeProperty(6,"hide",a);break;default:this.setShapeProperty(6,null==d&&null==h?"toggle":"toggleOn",a),null!=d&&this.setShapeProperty(6,"setFormats",d)}});p(k,"showMeasureCount",function(a){var c=this.vwr.getShapeProperty(6,
"selected"),b=c.cardinality();if(a)for(a=c.nextSetBit(0);0<=a;a=c.nextSetBit(a+1))this.showString(this.vwr.shm.getShape(6).getInfoAsString(a));this.showString(b+(1==b?" measure":" measures")+" selected")},"~B");p(k,"connect",function(a){var c=this.e,b=S(2,0),f=Array(2);f[0]=f[1]=this.vwr.bsA();var e=NaN,d=P(-1,[-2147483648]),h=0,j=131071,g=1073742026,m=!1,n=!1,q=!1,t=3.4028235E38,l=!1,k=0,p=0,B=new JU.BS,s=!1,D=0,u=0,y=0,r=!1;if(1==this.slen)this.chk||this.vwr.rebondState(c.$isStateScript);else if(1073877011==
this.tokAt(1))this.chk||this.vwr.connectNBO(this.e.optParameterAsString(2));else{for(;a<this.slen;++a){switch(this.getToken(a).tok){case 1073742335:case 1073742334:this.checkLength(2);this.chk||this.vwr.rebondState(c.$isStateScript);return;case 2:case 3:if(0<k){(n||l)&&c.error(23);j=JU.Edge.getBondOrderFromFloat(this.floatParameter(a));131071==j&&this.invArg();n=!0;break}2<++p&&c.bad();var z=this.floatParameter(a);268441090==this.tokAt(a+1)&&(z=-z/100,a++);b[h++]=z;break;case 12290:case 10:case 1073742325:(2<
k||s&&0<k)&&c.bad();(n||l)&&this.invArg();f[k++]=this.atomExpressionAt(a);s=c.isBondSet;if(2==k){for(var z=c.iToken,M=a;M<z;M++)if(1073741824==this.tokAt(M)&&this.paramAsStr(M).equals("_1")){D=a;break}c.iToken=z}a=c.iToken;break;case 1086324742:r=!0;break;case 1765808134:case 603979967:case 1073742074:l=!0;t=this.getColorTrans(c,a,!1,d);a=c.iToken;break;case 1073742086:d=1073741852==this.tokAt(2);this.checkLength(d?3:2);if(this.chk)return;this.vwr.clearModelDependentObjects();this.vwr.ms.deleteAllBonds();
e=new JU.BS;this.vwr.ms.setPdbConectBonding(0,0,e);if(d){c=c.$isStateScript&&this.vwr.getBoolean(603979872);this.vwr.ms.autoBondBs4(null,null,e,null,this.vwr.getMadBond(),c,null);this.vwr.addStateScript(c?"set legacyAutoBonding TRUE;connect PDB AUTO;set legacyAutoBonding FALSE;":"connect PDB auto;",!1,!0);return}this.vwr.addStateScript("connect PDB;",!1,!0);return;case 1073741852:case 1073741904:case 1073742025:case 1073742026:q=!0;++a!=this.slen&&this.invArg();g=c.theTok;1073741852==g&&!(131071==
j||2048==j||515==j)&&this.invArg();break;case 659482:l||(d[0]=16777215,t=0.5,e=this.vwr.getFloat(570425406),l=!0),q||(g=1073742026,q=!0);case 1073741824:if(c.isColorParam(a)){u=-a;break}case 1075838996:case 1613238294:j=this.paramAsStr(a);131071==(j=JU.Edge.getBondOrderFromString(j))&&this.invArg();n&&c.error(18);n=!0;switch(j){case 33:switch(this.tokAt(a+1)){case 3:j=JU.Edge.getPartialBondOrderFromFloatEncodedInt(this.st[++a].intValue);break;case 2:j=this.intParameter(++a)}break;case 2048:2==this.tokAt(a+
1)&&(j=this.intParameter(++a)<<11,y=this.floatParameter(++a));break;case 65537:q||(g=1073742025,q=!0)}break;case 1665140738:e=this.floatParameter(++a);l=!0;break;case 1073742333:++a!=this.slen&&this.invArg();case 12291:g=12291;m=!0;l=!1;break;default:u=a}0<a&&(u==-a||u==a&&c.isColorParam(a)?(l=!0,d[0]=c.getArgbParam(a),a=c.iToken):u==a&&this.invArg())}if(!this.chk){2>h&&(0==h&&(b[0]=1E8),b[1]=b[0],b[0]=0.1);l&&(n||(j=65535),q||(g=1073742025));n=h=0;if(0<D){y=new JU.BS;this.vwr.definedAtomSets.put("_1",
y);r=f[0];for(q=r.nextSetBit(0);0<=q;q=r.nextSetBit(q+1))y.set(q),f=this.vwr.makeConnections(b[0],b[1],j,g,y,this.atomExpressionAt(D),B,s,!1,0),h+=Math.abs(f[0]),n+=f[1],y.clear(q)}else f=this.vwr.makeConnections(b[0],b[1],j,g,f[0],f[1],B,s,r,y),h+=Math.abs(f[0]),n+=f[1];b=c.doReport();m?b&&c.report(J.i18n.GT.i(J.i18n.GT.$("{0} connections deleted"),n),!1):(l&&(this.vwr.selectBonds(B),Float.isNaN(e)||c.setShapeSizeBs(1,Math.round(2E3*e),null),this.finalizeObject(1,d[0],t,0,!1,null,0,B),this.vwr.selectBonds(null)),
b&&c.report(J.i18n.GT.o(J.i18n.GT.$("{0} new bonds; {1} modified"),E(-1,[Integer.$valueOf(h),Integer.$valueOf(n)])),!1))}}},"~N");p(k,"console",function(){switch(this.getToken(1).tok){case 1073742334:this.chk||this.vwr.showConsole(!1);break;case 1073742335:this.chk||this.vwr.showConsole(!0);break;case 1073741882:this.chk||this.vwr.sm.clearConsole();break;case 134221856:this.showString(this.stringParameter(2));break;default:this.invArg()}});p(k,"data",function(){var a=this.e,c=null,b=null,f=!1,e;switch(a.iToken=
this.slen){case 5:c=this.paramAsStr(2);case 4:case 2:b=this.paramAsStr(1);if(b.equalsIgnoreCase("clear")){this.chk||this.vwr.setData(null,null,0,0,0,0,0);return}if(0<=(e=b.indexOf("@")))c=""+a.getParameter(b.substring(e+1),4,!0),b=b.substring(0,e).trim();else if(null==c&&0<=(e=b.indexOf(" ")))c=b.substring(e+1).trim(),b=b.substring(0,e).trim(),f=!0;break;default:a.bad()}e=b.substring(0,(b+" ").indexOf(" ")).toLowerCase();if(e.equals("model")||e.equals("append"))a.cmdLoad();else if(!this.chk){var d=
0<=b.toLowerCase().indexOf("(default)");if(e.equals("connect_atoms"))this.vwr.ms.connect(this.parseDataArray(c,!1));else if(0==e.indexOf("ligand_"))this.vwr.setLigandModel(b.substring(7).toUpperCase()+"_data",c.trim());else if(0==e.indexOf("file_"))this.vwr.setLigandModel(b.substring(5)+"_file",c.trim());else if(a=Array(4),e.equals("element_vdw")){a[0]=e;a[1]=c.$replace(";","\n");c=JU.Elements.elementNumberMax;e=P(c+1,0);for(d=1;d<=c;d++)e[d]=d;a[2]=e;a[3]=Integer.$valueOf(0);this.vwr.setData("element_vdw",
a,c,0,0,0,0)}else if(0==e.indexOf("data2d_"))a[0]=b,a[1]=this.parseDataArray(c,!1),a[3]=Integer.$valueOf(2),this.vwr.setData(b,a,0,0,0,0,0);else if(0==e.indexOf("data3d_"))a[0]=b,a[1]=this.parseDataArray(c,!0),a[3]=Integer.$valueOf(3),this.vwr.setData(b,a,0,0,0,0,0);else{var h=JU.PT.getTokens(b);if(0==e.indexOf("property_")&&!(2==h.length&&h[1].equals("set"))){d=this.vwr.bsA();a[0]=e;var j=f?0:this.vwr.getP("propertyAtomNumberField").intValue(),g=f?0:this.vwr.getP("propertyAtomNumberColumnCount").intValue(),
m=f?-2147483648:this.vwr.getP("propertyDataField").intValue(),n=f?0:this.vwr.getP("propertyDataColumnCount").intValue();!f&&0<=b.indexOf(" ")&&(3==h.length&&(j=JU.PT.parseInt(h[1]),m=JU.PT.parseInt(h[2])),5==h.length&&(j=JU.PT.parseInt(h[1]),g=JU.PT.parseInt(h[2]),m=JU.PT.parseInt(h[3]),n=JU.PT.parseInt(h[4])));0>j&&(j=0);0>m&&(m=0);b=this.vwr.ms.ac;f=null;h=JU.BS.newN(b);if(0<j){for(var f=P(b+2,0),q=0;q<=b;q++)f[q]=-1;for(q=d.nextSetBit(0);0<=q;q=d.nextSetBit(q+1)){var t=this.vwr.ms.at[q].getAtomNumber();
t>b+1||(0>t||h.get(t))||(h.set(t),f[t]=q)}a[2]=f}else a[2]=JU.BSUtil.copy(d);a[1]=c;a[3]=Integer.$valueOf(0);this.vwr.setData(e,a,b,j,g,m,n)}else"occupany".equals(e)&&(e="occupancy"),j=JM.AtomCollection.getUserSettableType(e),-1<j?this.vwr.setAtomData(j,e,c,d):(a[0]=b,a[1]=c,a[3]=Integer.$valueOf(0),this.vwr.setData(e,a,0,0,0,0,0))}}});p(k,"ellipsoid",function(){var a=this.e,c=0,b=1,f=3.4028235E38,e=!1,d=!1;this.setShapeProperty(20,"thisID",null);switch(this.getToken(1).tok){case 1073742335:c=2147483647;
break;case 1073742334:break;case 2:c=this.intParameter(1);break;case 36867:this.e.sm.loadShape(20);this.setShapeProperty(20,"select",this.paramAsStr(2));b=a.iToken;d=e=!0;break;case 1073741974:case 268441089:case 1073741824:this.e.sm.loadShape(20);1073741974==a.theTok&&b++;this.setShapeId(20,b,!1);b=a.iToken;e=!0;break;default:this.invArg()}if(e){for(c=P(-1,[-2147483648]);++b<this.slen;){var e=this.paramAsStr(b),h=null;this.getToken(b);if(!d)switch(a.theTok){case 1073742330:e="points";h=Array(3);
h[0]=a.objectNameParameter(++b);if(this.chk)continue;a.getShapePropertyData(24,"getVertices",h);break;case 1825200146:h=this.e.optParameterAsString(++b);if(0==h.length)continue;break;case 1611272194:var h=Array(3),j=null;switch(this.getToken(b+1).tok){case 11:for(var b=a.theToken.value,g=3;0<=--g;)b.getColumnV(g,h[g]=new JU.V3);break;case 1073742195:b+=2;case 268437504:j=new JU.Lst;for(g=3;0<=--g;){switch(this.tokAt(++b)){case 268437504:break;default:a.isCenterParameter(b)?j.addLast(JS.SV.newV(8,
this.centerParameter(b))):268437504!=this.tokAt(b)&&j.addLast(this.getToken(b))}b=a.iToken}268437505!=this.getToken(++b).tok&&this.invArg();break;case 7:j=a.theToken.getList();switch(j.size()){case 1:j=new JU.Lst;for(g=3;0<=--g;)j.addLast(this.getToken(++b));break;case 3:break;default:this.invArg()}break;default:for(g=0;3>g;g++)h[g]=new JU.V3,h[g].setT(this.centerParameter(++b)),b=a.iToken}if(null!=j)for(b=3;0<=--b;)switch(g=j.get(b),g.tok){case 7:h[b]=JU.V3.new3(JS.SV.fValue(g.getList().get(0)),
JS.SV.fValue(g.getList().get(1)),JS.SV.fValue(g.getList().get(2)));break;case 8:h[b]=JU.V3.newV(g.value)}b=a.iToken;break;case 12289:h=this.centerParameter(++b);b=a.iToken;break;case 1094713359:h=Integer.$valueOf(this.intParameter(++b));break;case 12291:h=Boolean.TRUE,this.checkLength(b+1)}if(null==h)switch(a.theTok){case 1073742335:e="on";h=Boolean.TRUE;break;case 1073742334:e="on";h=Boolean.FALSE;break;case 536875059:this.isFloatParameter(b+1)?h=Float.$valueOf(this.floatParameter(++b)):a.isCenterParameter(b)?
(b=this.centerParameter(b),h=S(-1,[b.x,b.y,b.z])):h=a.floatParameterSet(++b,3,3);b=a.iToken;break;case 12290:case 10:case 1073742325:e="atoms";h=this.atomExpressionAt(b);b=a.iToken;break;case 1765808134:case 603979967:case 1073742074:f=this.getColorTrans(a,b,!0,c);b=a.iToken;continue;case 1073742075:h=this.paramAsStr(++b)}null==h&&this.invArg();this.setShapeProperty(20,e.toLowerCase(),h)}this.finalizeObject(20,c[0],f,0,!1,null,0,null);this.setShapeProperty(20,"thisID",null)}else a.setShapeSizeBs(20,
c,null)});p(k,"image",function(){this.chk||this.vwr.getConsole();var a=1,c=null;1073741974==this.tokAt(1)&&(c=this.e.optParameterAsString(++a),a++);var b=this.e.optParameterAsString(a),f=this.e.optParameterAsString(this.slen-1).equalsIgnoreCase("close");if(!f&&(this.slen==a||this.slen==a+2))b=this.slen==a+2?this.intParameter(a++):-1,a=0>b?-1:this.intParameter(a),f=new java.util.Hashtable,f.put("fileName","\u0001\u0001"+c),f.put("backgroundColor",Integer.$valueOf(this.vwr.getBackgroundArgb())),f.put("type",
"png"),f.put("quality",Integer.$valueOf(-1)),f.put("width",Integer.$valueOf(b)),f.put("height",Integer.$valueOf(a)),this.chk||this.vwr.processWriteOrCapture(f);else{if(f)switch(this.slen){case 2:b="closeall";break;case 3:case 4:break;default:this.checkLength(0)}this.chk||this.vwr.fm.loadImage(f?"\u0001close":b,"\u0001"+b+"\u0001"+("".equals(c)||null==c?null:c),!1)}});p(k,"invertSelected",function(){var a=this.e,c=null,b=null,f=null,e=-2147483648,d=1;switch(this.tokAt(1)){case 0:if(this.chk)return;
f=this.vwr.bsA();c=this.vwr.ms.getAtomSetCenter(f);this.vwr.invertAtomCoord(c,null,f,-1,!1);return;case 528443:case 1153433601:d++;case 10:case 1073742325:case 12290:f=this.atomExpressionAt(d);if(!a.isAtomExpression(a.iToken+1)){a.checkLengthErrorPt(a.iToken+1,a.iToken+1);if(!this.chk)for(a=f.nextSetBit(0);0<=a;a=f.nextSetBit(a+1))this.vwr.invertAtomCoord(null,null,f,a,!1);return}e=f.nextSetBit(0);f=this.atomExpressionAt(a.iToken+1);break;case 134217751:c=a.centerParameter(2,null);break;case 134217750:b=
a.planeParameter(1,!1);break;case 134219777:b=a.hklParameter(2,null,!0)}a.checkLengthErrorPt(a.iToken+1,1);null==b&&(null==c&&-2147483648==e)&&this.invArg();this.chk||-1!=e&&this.vwr.invertSelected(c,b,e,f)});p(k,"mapProperty",function(){for(var a,c,b,f,e,d=0,h=0,j=0,g=this.e;;){if(1113589787==this.tokAt(1))a=this.vwr.bsA(),c=this.atomExpressionAt(2),b=f="selected";else{a=this.atomExpressionAt(1);if(1073742336!=this.tokAt(++g.iToken)||!JS.T.tokAttr(d=this.tokAt(++g.iToken),1077936128))break;b=this.paramAsStr(g.iToken);
c=this.atomExpressionAt(++g.iToken);if(1073742336!=this.tokAt(++g.iToken)||!JS.T.tokAttr(h=this.tokAt(++g.iToken),2048))break;f=this.paramAsStr(g.iToken)}e=JS.T.tokAttr(j=this.tokAt(g.iToken+1),1077936128)?this.paramAsStr(++g.iToken):JS.T.nameOf(j=1094715393);g.checkLast(g.iToken);if(this.chk)return;var m=null;this.showString("mapping "+b.toUpperCase()+" for "+a.cardinality()+" atoms to "+f.toUpperCase()+" for "+c.cardinality()+" atoms using "+e.toUpperCase());if(JS.T.tokAttrOr(d,1094713344,1111490560)&&
JS.T.tokAttrOr(h,1094713344,1111490560)&&JS.T.tokAttrOr(j,1094713344,1111490560)){var n=this.getBitsetPropertyFloat(a,d|224,null,NaN,NaN),q=this.getBitsetPropertyFloat(a,j|224,null,NaN,NaN),d=this.getBitsetPropertyFloat(c,j|224,null,NaN,NaN),t=1715472409==h,l=S(t?this.vwr.ms.ac:d.length,0),m=new JU.BS;if(n.length==q.length){for(var k=new java.util.Hashtable,j=0;j<n.length;j++)k.put(Float.$valueOf(q[j]),Float.$valueOf(n[j]));n=-1;for(j=q=0;j<d.length;j++){var n=c.nextSetBit(n+1),p=k.get(Float.$valueOf(d[j]));
null!=p&&(m.set(n),l[t?n:q]=p.floatValue(),q++)}t?this.vwr.setData(f,E(-1,[f,l,m,Integer.$valueOf(1),Boolean.TRUE]),this.vwr.ms.ac,0,0,2147483647,0):JS.T.tokAttr(h,2048)?this.vwr.setAtomProperty(m,h,0,0,null,l,null):this.error(56)}}if(null==m){b=this.getBitsetIdent(a,"{"+e+"=%["+e+"]}."+f+" = %["+b+"]",null,!1,2147483647,!1);a=new JU.SB;for(j=0;j<b.length;j++)0>b[j].indexOf("null")&&a.append(b[j]).appendC("\n");JU.Logger.debugging&&JU.Logger.debug(a.toString());b=JU.BSUtil.copy(this.vwr.slm.bsSubset);
this.vwr.slm.setSelectionSubset(c);try{g.runScript(a.toString())}catch(B){if(R(B,Exception))c=B,this.vwr.slm.setSelectionSubset(b),g.errorStr(-1,"Error: "+c.getMessage());else if(R(B,Error))c=B,this.vwr.slm.setSelectionSubset(b),g.errorStr(-1,"Error: "+c.toString());else throw B;}this.vwr.slm.setSelectionSubset(b)}this.showString("DONE");return}this.invArg()});p(k,"minimize",function(a){for(var c=null,b=2147483647,f=0,e=!1,d=!1,h=null,j=!1,g=!1,m=this.vwr.getMinimizer(!1),n=0,q=a?2:1;q<this.slen;q++)switch(this.getToken(q).tok){case 1073741905:f=
this.floatParameter(++q);continue;case 1073742114:n=this.floatParameter(++q);continue;case 1073741935:b=0;continue;case 1073741874:case 1073742162:this.checkLength(2);if(this.chk||null==m)return;m.setProperty(this.paramAsStr(q),null);return;case 1073741882:this.checkLength(2);if(this.chk||null==m)return;m.setProperty("clear",null);return;case 1073741894:1!=q&&this.invArg();c=a=0;b=P(5,0);if(1073741882==this.tokAt(++q))this.checkLength(3);else{for(;4>a&&!this.isFloatParameter(q);)b[++a]=this.atomExpressionAt(q).nextSetBit(0),
q=this.e.iToken+1;b[0]=a;1==a&&this.invArg();c=this.floatParameter(this.e.checkLast(q))}this.chk||this.vwr.getMinimizer(!0).setProperty("constraint",E(-1,[b,Float.$valueOf(c)]));return;case 12293:1!=q&&this.invArg();if(this.slen==++q){this.chk||(q=this.vwr.getMinimizer(!0).getProperty("fixed",0),null==q?this.e.showString("no atoms are fixed for minimization"):(a=q.cardinality(),this.e.showString(a+(1==a?" atom is":" atoms are")+" fixed for minimization: "+q+"\nunfix them with MINIMIZE FIX NONE")));
return}h=this.atomExpressionAt(q);0>h.nextSetBit(0)&&(h=null);q=this.e.iToken;this.chk||this.vwr.getMinimizer(!0).setProperty("fixed",h);if(q+1==this.slen)return;continue;case 1073741828:e=!0;continue;case 1073742072:case 1113589787:j=!0;break;case 1086324742:g=!0;break;case 1073742148:d=!0;break;case 266298:b=this.intParameter(++q);continue;case 10:case 1073742325:j=!0;case 1275082241:1275082241==this.e.theTok&&q++;c=this.atomExpressionAt(q);q=this.e.iToken;1073742072==this.tokAt(q+1)&&(q++,j=!0);
continue;default:this.invArg()}a&&(e||j||g)&&this.invArg();if(!this.chk)try{this.vwr.minimize(this.e,b,f,c,h,null,n,(e?16:0)|(a?256:0)|(j?32:0)|(g?64:0)|(d?1:0))}catch(t){if(R(t,Exception))throw new JS.ScriptInterruption(this.e,"minimize",1);throw t;}},"~B");p(k,"modulation",function(){var a=null,c=this.e,b=!0,f=!1,e=null,d=1;switch(this.getToken(d).tok){case 1073742334:b=!1;case 0:case 1073742335:break;case 12290:case 10:case 1073742325:e=this.atomExpressionAt(1);switch(this.tokAt(c.iToken+1)){case 1073742334:b=
!1;case 1073742335:c.iToken++}c.checkLast(c.iToken);break;case 1073742332:case 8:a=c.getPoint3f(1,!1,!0);f=1073742335==this.tokAt(c.iToken+1);break;default:var h=c.theToken.value.toString();d++;h.equalsIgnoreCase("t")?c.theTok=3:h.equalsIgnoreCase("m")||h.equalsIgnoreCase("q")?c.theTok=2:this.invArg();case 3:case 2:switch(c.theTok){case 3:this.isFloatParameter(d)?(a=this.floatParameter(d),a=JU.P3.new3(a,a,a)):a=c.getPoint3f(d,!1,!0);break;case 2:2==this.tokAt(d)?(f=this.intParameter(d),a=JU.P3.new3(f,
f,f)):a=c.getPoint3f(d,!1,!0),f=!0}break;case 536875059:b=this.floatParameter(2);this.chk||this.vwr.setFloatProperty("modulationScale",b);return}this.chk||(this.vwr.tm.setVibrationPeriod(0),this.vwr.setModulation(e,b,a,f))});p(k,"mutate",function(){var a=this.e.iToken,c,b=null,f=null,e=null,d=!1;switch(this.tokAt(++a)){case 1073741904:b="alpha";d=!0;c=null;switch(this.tokAt(++a)){case 0:this.invArg();break;default:switch(f=this.e.paramAsStr(a),a=this.e.iToken,this.tokAt(a+1)){case 0:break;case 268437504:case 1073742195:case 7:b=
null;e=this.e.floatParameterSet(++a,2,2147483647);1==e.length%2&&this.invArg();a=this.e.iToken;break;default:b=this.e.paramAsStr(++a),a=this.e.iToken}}break;case 2:this.st[1]=JS.T.o(4,""+this.st[1].value);default:c=this.atomExpressionAt(a);a=++this.e.iToken;break;case 268441089:c=this.vwr.getFrameAtoms(),a=++this.e.iToken}if(!this.chk&&null!=c){c.and(this.vwr.getFrameAtoms());var h=c.nextSetBit(0);0>h&&this.invArg();h=this.vwr.ms.at[h].mi;if(this.vwr.ms.isTrajectory(h)||!this.vwr.ms.am[h].isBioModel)return}null==
f&&(f=this.e.optParameterAsString(a));this.e.checkLast(a);if(!this.chk){a=f.startsWith("~");if(!a&&!d&&(0<=f.indexOf(".")||0>f.indexOf("-")&&3<f.length&&f.startsWith("==")))d=E(-1,[f]),f=null;else if(f=JU.PT.replaceAllCharacters(f,",; \t\n"," ").trim().toUpperCase(),!a&&0<=f.indexOf("-"))d=JU.PT.split(f,"-");else{if(a||3!=f.length||!this.vwr.getJBR().isKnownPDBGroup(f,20))f=this.vwr.getJBR().toStdAmino3(a?f.substring(1):f);d=JU.PT.getTokens(f)}this.e.iToken=this.e.slen;0<d.length&&!this.vwr.getJBR().getBioModelSet(this.vwr.ms).mutate(c,
f,d,b,e)&&this.invArg()}});p(k,"navigate",function(){var a=this.e;if(1==this.slen)a.setBooleanProperty("navigationMode",!0);else{var c=JU.V3.new3(0,1,0),b=new JU.Lst,f;if(2==this.slen)switch(this.getToken(1).tok){case 1073742335:case 1073742334:if(this.chk)return;a.setObjectMad10(34,"axes",10);this.setShapeProperty(34,"position",JU.P3.new3(50,50,3.4028235E38));a.setBooleanProperty("navigationMode",!0);this.vwr.tm.setNavOn(1073742335==a.theTok);return;case 1073742162:this.chk||this.vwr.tm.setNavXYZ(0,
0,0);return;case 8:case 1112152078:break;default:this.invArg()}!this.chk&&!this.vwr.getBoolean(603979889)&&a.setBooleanProperty("navigationMode",!0);for(var e=1;e<this.slen;e++){var d=this.isFloatParameter(e)?this.floatParameter(e++):2;0>d&&this.invArg();!this.chk&&0<d&&a.refresh(!1);switch(this.getToken(e).tok){case 8:case 1073742332:f=this.getPoint3f(e,!0);a.iToken++;a.iToken!=this.slen&&this.invArg();this.chk||this.vwr.tm.setNavXYZ(f.x,f.y,f.z);return;case 554176526:f=this.floatParameter(++e);
this.chk||b.addLast(E(-1,[Integer.$valueOf(554176526),Float.$valueOf(d),Float.$valueOf(f)]));continue;case 12289:f=this.centerParameter(++e);e=a.iToken;this.chk||b.addLast(E(-1,[Integer.$valueOf(134217751),Float.$valueOf(d),f]));continue;case 528432:switch(this.getToken(++e).tok){case 1111492629:c.set(1,0,0);e++;break;case 1111492630:c.set(0,1,0);e++;break;case 1111492631:c.set(0,0,1);e++;break;case 8:case 1073742332:c.setT(this.getPoint3f(e,!0));e=a.iToken+1;break;case 1073741824:this.invArg()}f=
this.floatParameter(e);this.chk||b.addLast(E(-1,[Integer.$valueOf(528432),Float.$valueOf(d),c,Float.$valueOf(f)]));continue;case 4160:var h=f=NaN;if(this.isFloatParameter(++e))f=this.floatParameter(e),h=this.floatParameter(++e);else switch(this.tokAt(e)){case 1111492629:f=this.floatParameter(++e);break;case 1111492630:h=this.floatParameter(++e);break;default:f=this.centerParameter(e);e=a.iToken;this.chk||b.addLast(E(-1,[Integer.$valueOf(4160),Float.$valueOf(d),f]));continue}this.chk||b.addLast(E(-1,
[Integer.$valueOf(268441090),Float.$valueOf(d),Float.$valueOf(f),Float.$valueOf(h)]));continue;case 268441088:continue;case 1112152078:f=new JU.Lst;a.isAtomExpression(e+1)?(h=this.atomExpressionAt(++e),e=a.iToken):h=this.vwr.bsA();if(this.chk)return;this.vwr.getPolymerPointsAndVectors(h,f);var j;if(0<(j=f.size())){for(var h=Array(j),g=0;g<j;g++)h[g]=f.get(g);b.addLast(E(-1,[Integer.$valueOf(1112152078),Float.$valueOf(d),h]));continue}break;case 1073742084:if(1073742330==this.getToken(e+1).tok){e++;
f=a.objectNameParameter(++e);if(this.chk)return;this.setShapeProperty(22,"thisID",f);f=this.getShapeProperty(22,"vertices");a.refresh(!1);null==f&&this.invArg();h=K(this.isFloatParameter(e+1)?this.floatParameter(++e):0);j=K(this.isFloatParameter(e+1)?this.floatParameter(++e):2147483647);b.addLast(E(-1,[Integer.$valueOf(1073742084),Float.$valueOf(d),f,null,P(-1,[h,j])]));continue}for(f=new JU.Lst;a.isCenterParameter(e+1);)f.addLast(this.centerParameter(++e)),e=a.iToken;if(0<f.size()){f=f.toArray(Array(f.size()));
this.chk||b.addLast(E(-1,[Integer.$valueOf(1073742084),Float.$valueOf(d),f,null,P(-1,[0,2147483647])]));continue}default:this.invArg()}}!this.chk&&!this.vwr.isJmolDataFrame()&&this.vwr.tm.navigateList(a,b)}});p(k,"plot",function(a){var c=this.e,b=this.vwr.am.cmi;0>b&&c.errorStr(30,"plot");var b=this.vwr.ms.getJmolDataSourceFrame(b),f=a.length-1,e=a!==this.st,d=!0,h=this.st;e&&(c.st=this.st=a);var j=e?134222350:a[0].tok,g=e||134221850==j||4138==j?0:1,m=null,n=!0,q=!1;switch(j){case 135176:n=!1;q=!0;
break;case 134222350:d=n=!1;break;case 134221856:n=!1,4==JS.CmdExt.tokAtArray(f,a)?m=this.stringParameter(f--):1073742336==JS.CmdExt.tokAtArray(f-1,a)?(m=this.paramAsStr(f-2)+"."+this.paramAsStr(f),f-=3):(c.st=this.st=h,c.iToken=this.st.length,this.error(13)),c.slen=this.slen=f+1}var e="",t=null,l="",k=!1,p=!1,B=!1,s=!1,D=Array(3),u=P(3,0),y=JU.BSUtil.copy(this.vwr.bsA()),r="; select "+JU.Escape.eBS(y)+";\n ",s=c.optParameterAsString(f).toLowerCase(),z=null,M=null,w=null,H=JS.CmdExt.tokAtArray(g,
a);4==H&&(H=JS.T.getTokFromName(a[g].value));switch(H){default:c.iToken=1;this.invArg();break;case 134221834:c.iToken=1;s="data";r="";break;case 1715472409:c.iToken=g+1;for(a=0;3>a;a++){switch(this.tokAt(c.iToken)){case 4:u[a]=JS.T.getTokFromName(c.getToken(c.iToken).value);break;default:u[a]=this.tokAt(c.iToken);break;case 0:0==a&&this.invArg();case 1287653388:case 32:case 64:a=2;continue}1715472409!=u[a]&&!JS.T.tokAttr(u[a],1077936128)&&this.invArg();D[a]=this.getToken(c.iToken).value.toString();
c.iToken++}1287653388==this.tokAt(c.iToken)&&(w=this.stringParameter(++c.iToken),d=!1,c.iToken++);32==this.tokAt(c.iToken)&&(z=this.getPoint3f(++c.iToken,!1),c.iToken++);64==this.tokAt(c.iToken)&&(M=this.getPoint3f(++c.iToken,!1),c.iToken++);s="property "+D[0]+(null==D[1]?"":" "+D[1])+(null==D[2]?"":" "+D[2]);0>y.nextSetBit(0)&&(y=this.vwr.getModelUndeletedAtomsBitSet(b));l="select "+JU.Escape.eBS(y)+";\n ";break;case 4138:s.equalsIgnoreCase("draw")&&(s=c.optParameterAsString(--f).toLowerCase());
s=f>g&&s.startsWith("r");s="ramachandran"+(s?" r":"")+(135176==j?" draw":"");break;case 134221850:case 136314895:e=' "'+this.vwr.getQuaternionFrame()+'"';l="set quaternionFrame"+e+";\n  ";k=!0;s.equalsIgnoreCase("draw")&&(q=!0,s=c.optParameterAsString(--f).toLowerCase());B=(p=s.startsWith("deriv")||s.startsWith("diff"))&&0<s.indexOf("2");p&&f--;if(s.equalsIgnoreCase("helix")||s.equalsIgnoreCase("axis"))p=q=!0,f=-1;s=((f<=g?"":c.optParameterAsString(f))+"w").substring(0,1);if(s.equals("a")||s.equals("r"))p=
!0;JU.PT.isOneOf(s,";w;x;y;z;r;a;")||c.evalError("QUATERNION [w,x,y,z,a,r] [difference][2]",null);s="quaternion "+s+(p?" difference":"")+(B?"2":"")+(q?" draw":"")}this.st=h;if(this.chk)return"";if(n&&(l+="plot "+s,h=this.vwr.ms.getJmolDataFrameIndex(b,l),0<h&&134221856!=j&&134222350!=j))return this.vwr.setCurrentModelIndexClear(h,!0),"";n=f=h=null;g=Array(3);if(1715472409==H){h=this.getBitsetPropertyFloat(y,u[0]|224,1715472409==u[0]?D[0]:null,null==z?NaN:z.x,null==M?NaN:M.x);g[0]=D[0]+" "+JU.Escape.eAF(h);
null!=D[1]&&(f=this.getBitsetPropertyFloat(y,u[1]|224,1715472409==u[1]?D[1]:null,null==z?NaN:z.y,null==M?NaN:M.y),g[1]=D[1]+" "+JU.Escape.eAF(f));null!=D[2]&&(n=this.getBitsetPropertyFloat(y,u[2]|224,1715472409==u[2]?D[2]:null,null==z?NaN:z.z,null==M?NaN:M.z),g[2]=D[2]+" "+JU.Escape.eAF(n));null==z&&(z=JU.P3.new3(this.getPlotMinMax(h,!1,u[0]),this.getPlotMinMax(f,!1,u[1]),this.getPlotMinMax(n,!1,u[2])));null==M&&(M=JU.P3.new3(this.getPlotMinMax(h,!0,u[0]),this.getPlotMinMax(f,!0,u[1]),this.getPlotMinMax(n,
!0,u[2])));JU.Logger.info("plot min/max: "+z+" "+M);q=t=null;if(d){q=JU.P3.new3(1,1,1);t=new JU.P3;t.ave(M,z);q.sub2(M,z);q.set(q.x/200,q.y/200,q.z/200);JS.T.tokAttr(u[0],1094713344)?(q.x=1,t.x=0):0.1<q.x&&10>=q.x&&(q.x=1);JS.T.tokAttr(u[1],1094713344)?(q.y=1,t.y=0):0.1<q.y&&10>=q.y&&(q.y=1);JS.T.tokAttr(u[2],1094713344)?(q.z=1,t.z=0):0.1<q.z&&10>=q.z&&(q.z=1);if(null==D[2]||null==D[1])t.z=z.z=M.z=q.z=0;for(a=0;a<h.length;a++)h[a]=(h[a]-t.x)/q.x;if(null!=D[1])for(a=0;a<f.length;a++)f[a]=(f[a]-t.y)/
q.y;if(null!=D[2])for(a=0;a<n.length;a++)n[a]=(n[a]-t.z)/q.z}t=E(-1,[y,h,f,n,z,M,q,t,w,g])}if(134221856==j)return this.vwr.writeFileData(m,"PLOT_"+s,b,t);d=s.equals("data")?"1 0 H 0 0 0 # Jmol PDB-encoded data":this.vwr.getPdbData(b,s,null,t,null,!0);if(134222350==j)return d;JU.Logger.debugging&&JU.Logger.debug(d);if(135176==j)return c.runScript(d),"";j=this.vwr.fm.getFileInfo();m=this.vwr.getBoolean(603979792);this.vwr.g.appendNew=!0;d=null!=d&&null==this.vwr.openStringInlineParamsAppend(d,null,
!0);this.vwr.g.appendNew=m;this.vwr.fm.setFileInfo(j);if(!d)return"";j=this.vwr.ms.mc;this.vwr.ms.setJmolDataFrame(l,b,j-1);1715472409!=H&&(l+=";\n"+r);l=this.vwr.addStateScript(l,!0,!1);d=150;switch(H){default:b="frame 0.0; frame last; reset;select visible;wireframe only;";d=10;break;case 1715472409:this.vwr.setFrameTitle(j-1,s+" plot for model "+this.vwr.getModelNumberDotted(b));b="frame 0.0; frame last; reset;select visible; spacefill 3.0; wireframe 0;draw plotAxisX"+j+' {100 -100 -100} {-100 -100 -100} "'+
D[0]+'";draw plotAxisY'+j+' {-100 100 -100} {-100 -100 -100} "'+D[1]+'";';null!=D[2]&&(b+="draw plotAxisZ"+j+' {-100 -100 100} {-100 -100 -100} "'+D[2]+'";');break;case 4138:this.vwr.setFrameTitle(j-1,"ramachandran plot for model "+this.vwr.getModelNumberDotted(b));b="frame 0.0; frame last; reset;select visible; color structure; spacefill 3.0; wireframe 0;draw ramaAxisX"+j+' {100 0 0} {-100 0 0} "phi";draw ramaAxisY'+j+' {0 100 0} {0 -100 0} "psi";';break;case 134221850:case 136314895:this.vwr.setFrameTitle(j-
1,s.$replace("w"," ")+e+" for model "+this.vwr.getModelNumberDotted(b)),b=JU.C.getHexCode(this.vwr.cm.colixBackgroundContrast),b="frame 0.0; frame last; reset;select visible; wireframe 0; spacefill 3.0; isosurface quatSphere"+j+" color "+b+" sphere 100.0 mesh nofill frontonly translucent 0.8;draw quatAxis"+j+'X {100 0 0} {-100 0 0} color red "x";draw quatAxis'+j+'Y {0 100 0} {0 -100 0} color green "y";draw quatAxis'+j+'Z {0 0 100} {0 0 -100} color blue "z";color structure;draw quatCenter'+j+"{0 0 0} scale 0.02;"}c.runScript(b+
r);l.setModelIndex(this.vwr.am.cmi);this.vwr.setRotationRadius(d,!0);c.sm.loadShape(31);this.showString("frame "+this.vwr.getModelNumberDotted(j-1)+(0<s.length?" created: "+s+(k?e:""):""));return""},"~A");p(k,"polyhedra",function(){var a=this.e,c=1==this.slen,b=!1,f=c,e=!1,d=!1,h=!1,j=NaN,g=0;a.sm.loadShape(21);this.setShapeProperty(21,"init",Boolean.TRUE);var m=3.4028235E38,n=-1,q=P(-1,[-2147483648]),t=-1,l=-1,k=null,p=0,B=null,s=!1,D=!1,u=null,y=null;if(2==this.slen&&1073742001==this.tokAt(1))this.chk||
a.showStringPrint(this.getShapeProperty(21,"list"),!1);else{for(var r=1;r<this.slen;++r){var z=null,u=null;switch(this.getToken(r).tok){case 1073742197:j=NaN;case 1073741872:a=1073742197==this.e.theTok?-1:2==this.tokAt(r+1)?this.intParameter(++r):1;this.chk||J.api.Interface.getInterface("JU.BZone",this.vwr,"script").createBZ(this.vwr,a,null,!1,B,j,p,k);return;case 6:z="info";u=this.e.theToken.getMap();f=!0;break;case 134217751:z="points";u=Float.$valueOf(1073742334==this.tokAt(++r)?0:this.e.floatParameter(r));
s=!0;break;case 536875059:j=this.floatParameter(++r);s=!0;continue;case 1814695966:null!=B&&this.invArg();z="unitCell";u=Boolean.TRUE;f=!0;break;case 1073742072:this.e.restrictSelected(!1,!1),a.theTok=1073742335;case 1073742335:case 12291:case 1073742334:(r+1!=this.slen||f||1<g)&&this.error(18);z=1073742334==a.theTok?"off":1073742335==a.theTok?"on":"delete";e=!0;break;case 7:(null==B||f)&&this.invArg();f=!0;u=this.getIntArray2(r);y=this.getAllPoints(a.iToken+1,3);r=a.iToken;O(y[0],"JM.Atom")&&this.setShapeProperty(21,
"model",Integer.$valueOf(y[0].getModelIndex()));z="definedFaces";u=E(-1,[u,y]);break;case 1073741961:z="full";break;case 2:null!=B&&this.invArg();z="nVertices";u=Integer.$valueOf(this.intParameter(r));f=!0;268436992==this.tokAt(r+1)&&r++;break;case 1677721602:null!=B&&this.invArg();0<g&&this.invPO();f=!0;z="bonds";c=!0;break;case 1073741852:-1!=n&&this.invArg(),n=0,r--;case 1665140738:r++;case 3:null!=B&&this.invArg();0<g&&this.invPO();z=0>=n?"radius":"radius1";u=Float.$valueOf(n=0==n?0:this.floatParameter(r));
f=!0;break;case 1073742066:this.isFloatParameter(r+1)?p=this.floatParameter(++r):(k=this.e.centerParameter(++r,null),r=a.iToken);s=!0;continue;case 1073741937:this.setShapeProperty(21,"collapsed",null);case 1073742099:case 1073741924:z=JS.T.nameOf(a.theTok);switch(this.tokAt(r+1)){case 268440324:case 268436992:r++}u=Float.$valueOf(this.floatParameter(++r));break;case 1094717454:null==B&&this.invArg();z="model";u=Integer.$valueOf(this.intParameter(++r));break;case 1073742170:(1<g||null!=B&&!b||t==
r)&&this.invPO();g=3;a.isAtomExpression(++r)?(z=f||b?"to":"toBitSet",u=this.atomExpressionAt(r)):a.isArrayParameter(r)?(z="toVertices",u=a.getPointArray(r,-1,!1)):this.error(19);r=a.iToken;f=!0;break;case 12290:case 10:case 1073742325:d&&this.invPO();switch(++g){case 1:null!=B&&this.invArg();z="centers";break;case 2:z="to";f=!0;break;default:a.bad()}u=this.atomExpressionAt(r);l=r=a.iToken;f=(new Boolean(f|r+1==this.slen)).valueOf();break;case 1073741948:case 1073741886:f=!0;D=1==r;d&&this.error(18);
d=!0;z=1073741886==this.e.theTok?"collapsed":null;this.isFloatParameter(r+1)&&this.setShapeProperty(21,"faceCenterOffset",Float.$valueOf(this.floatParameter(++r)));break;case 1765808134:case 603979967:case 1073742074:l==r-1&&(f=!0);m=this.getColorTrans(a,r,!0,q);s=!0;r=a.iToken;continue;case 1073742044:case 1073741933:case 1073741956:case 1073741934:l==r-1&&(f=!0);h&&this.error(18);s=h=!0;z=JS.T.nameOf(a.theTok);break;case 1073742182:case 1073742060:case 1073741861:case 1073741958:case 1073741964:continue;
case 1073741974:case 268441089:case 1073741824:case 4:if(!a.isColorParam(r)){1!=r&&this.invPO();B=1073741974==a.theTok?this.stringParameter(++r):a.optParameterAsString(r);268441089==this.tokAt(r+1)&&(B+=this.paramAsStr(++r));this.setShapeProperty(21,"thisID",B);this.setShapeProperty(21,"model",Integer.$valueOf(this.vwr.am.cmi));if(!a.isCenterParameter(r+1))continue;z="center";u=this.centerParameter(++r);r=a.iToken;b=!0;break}default:if(a.isColorParam(r)){l==r-1&&(f=!0);q[0]=a.getArgbParam(r);a.isCenterParameter(r)&&
(t=a.iToken+1);r=a.iToken;continue}this.invArg()}null!=z&&this.setShapeProperty(21,z,u);if(e)return}f?(!d&&c&&this.setShapeProperty(21,"bonds",null),this.setShapeProperty(21,"generate",Boolean.$valueOf(D))):s||this.error(19);null!=k&&this.setShapeProperty(21,"offset",k);Float.isNaN(j)||this.setShapeProperty(21,"scale",Float.$valueOf(j));-2147483648!=q[0]&&this.setShapeProperty(21,"colorThis",Integer.$valueOf(q[0]));3.4028235E38!=m&&a.setShapeTranslucency(21,"","translucentThis",m,null);this.setShapeProperty(21,
"init",Boolean.FALSE)}});p(k,"write",function(a){var c=this.e,b=1,f=1,e=null,d=null,h=null,j=null,g="SPT",m=!0,n=!1,q=!1;null==a?(a=this.st,n=this.vwr.isApplet&&!this.vwr.isSignedApplet||!this.vwr.haveAccess(JV.Viewer.ACCESS.ALL)||0<this.vwr.fm.getPathForAllFiles().length):(b=f=0,m=!1,n=!m);var t=JS.CmdExt.tokAtArray(b,a);if(4==t&&!m){var l=JS.T.getTokenFromName(JS.SV.sValue(a[0]).toLowerCase());null!=l&&(t=l.tok)}switch(t){case 0:break;case 134221850:case 4138:case 1715472409:return d=this.plot(a),
n?d:this.writeMsg(d);case 134222850:c.isArrayParameter(b+1)&&(e=c.stringParameterSet(++b),j=h=".",f=b=c.iToken+1,t=this.tokAt(b));break;default:g=JS.SV.sValue(this.tokenAt(b,a)).toUpperCase()}var k=this.vwr.getExportDriverList(),l=null,p=m?this.slen:a.length,B="",s=null,D=!1,u=null,y=0,r=null,z=!1,E=null,w=-1,H=-1,F=!1,v=null,G=-2147483648;0!=t&&(m&&1<this.slen&&1073741848==this.tokAt(this.slen-2))&&(g=this.paramAsStr(this.slen-1).toUpperCase(),f=p,p-=2,t=0);switch(t){case 15:case 6:g="VAR";u=this.tokenAt(b++,
a);break;case 1073741984:g="INLINE";l=JS.SV.sValue(this.tokenAt(++b,a));b++;break;case 1275068447:g="PGRP";b++;B=JS.SV.sValue(this.tokenAt(b,a)).toLowerCase();B.equals("draw")&&b++;break;case 1073742329:b++;z=!0;break;case 1073742158:case 134222850:for(s=JS.SV.sValue(this.tokenAt(++b,a)).toLowerCase();s.equals("localpath")||s.equals("remotepath");)s.equals("localpath")?h=JS.SV.sValue(this.tokenAt(++b,a)):j=JS.SV.sValue(this.tokenAt(++b,a)),s=JS.SV.sValue(this.tokenAt(++b,a)).toLowerCase();g="SPT";
break;case 1228935687:case 134320141:case 1610616855:case 135180:case 1073742015:case 1073742018:case 1073877011:case 1073877010:case 135188:b++;break;case 1073741991:g="ZIPALL";b++;break;case 36868:g="VAR";b+=2;break;case 1073741929:case 4115:case 4120:case 1073742062:case 1073742139:case 4166:case 1073741824:case 4:switch(t){case 4115:b+1<p&&1073742325==a[++b].tok||10==a[b].tok?(s=c.atomExpression(a,b,0,!0,!1,null,!0),b=c.iToken+1):s=this.vwr.getAllAtoms();this.chk||(E=this.vwr.ms.getModelBS(s,
!0));break;case 1073741929:t=4120,D=!0;case 4120:g="IMAGE";b++;break;case 1073742139:s=JS.SV.sValue(this.tokenAt(++b,a)).toUpperCase();JU.PT.isOneOf(s,";PNG;PNGJ;")?(r=s,b++):r="PNG";break;case 4166:y=c.intParameterRange(++b,1,10);if(2147483647==y)return"";this.chk||(this.vwr.tm.setVibrationPeriod(0),c.isJS||c.delayScript(100));b++;break;default:t=4120}if(4120==t&&b<a.length)if(t=JS.T.getTokenFromName(JS.SV.sValue(a[b]).toLowerCase()),null!=t&&(g=JS.SV.sValue(t).toUpperCase()),JU.PT.isOneOf(g,k.toUpperCase())){b++;
g=g.substring(0,1).toUpperCase()+g.substring(1).toLowerCase();F=!0;m&&(v="Jmol."+g.toLowerCase());break}else if(JU.PT.isOneOf(g,";ZIP;ZIPALL;SPT;STATE;")){b++;break}else g="IMAGE";2==JS.CmdExt.tokAtArray(b,a)&&(w=JS.SV.iValue(this.tokenAt(b++,a)),0>=w&&this.invArg(),H=JS.SV.iValue(this.tokenAt(b++,a)),0>=H&&this.invArg())}if(f<p){s=JS.SV.sValue(this.tokenAt(b,a));if(s.equalsIgnoreCase("clipboard")){if(this.chk)return""}else JU.PT.isOneOf(s.toLowerCase(),";jpg;jpeg;jpg64;jpeg64;gif;gift;pdf;ppm;png;pngj;pngt;")?
(2==JS.CmdExt.tokAtArray(b+1,a)&&2==JS.CmdExt.tokAtArray(b+2,a)&&(w=JS.SV.iValue(this.tokenAt(++b,a)),0>=w&&this.invArg(),H=JS.SV.iValue(this.tokenAt(++b,a)),0>=H&&this.invArg()),2==JS.CmdExt.tokAtArray(b+1,a)&&(G=JS.SV.iValue(this.tokenAt(++b,a)))):JU.PT.isOneOf(s.toLowerCase(),";xyz;xyzrn;xyzvib;mol;mol67;sdf;v2000;v3000;json;pdb;pqr;cml;cif;cifp1;pwmat;pwslab;qcjson;xsf;")&&(g=s.toUpperCase(),b+1==p&&b++);g.equals("IMAGE")&&JU.PT.isOneOf(s.toLowerCase(),";jpg;jpeg;jpg64;jpeg64;gif;gift;pdf;ppm;png;pngj;pngt;scene;")&&
(g=s.toUpperCase(),G=-2147483648,b++)}b+2==p&&JS.SV.sValue(this.tokenAt(++b,a));switch(JS.CmdExt.tokAtArray(b,a)){case 0:n=!0;break;case 1073741884:break;case 805307393:v=g.equals("IMAGE")?"?jmol.png":"?jmol."+g.toLowerCase();break;case 1073741824:case 4:v=JS.SV.sValue(this.tokenAt(b,a));if(v.equalsIgnoreCase("clipboard")||!this.vwr.haveAccess(JV.Viewer.ACCESS.ALL))v=null;break;default:this.invArg()}if(g.equals("IMAGE")||g.equals("FRAME")||g.equals("VIBRATION"))g=null!=v&&0<=v.indexOf(".")?v.substring(v.lastIndexOf(".")+
1).toUpperCase():"JPG";if(g.equals("ISOSURFACE")||g.equals("CONTACT"))q=g.equals("CONTACT"),g=null!=v&&0<=v.indexOf(".")?v.substring(v.lastIndexOf(".")+1).toUpperCase():"JVXL",g.equals("PMESH")?g="ISOMESH":g.equals("PMB")&&(g="ISOMESHBIN");t=JU.PT.isOneOf(g.toLowerCase(),";jpg;jpeg;jpg64;jpeg64;gif;gift;pdf;ppm;png;pngj;pngt;scene;");if(!t&&(g.equals("MNU")?g="MENU":g.equals("WRL")||g.equals("VRML")?(g="Vrml",F=!0):g.equals("X3D")?(g="X3d",F=!0):g.equals("STL")?(g="Stl",F=!0):g.equals("IDTF")?(g=
"Idtf",F=!0):g.equals("MA")?(g="Maya",F=!0):g.equals("JS")?(g="Js",F=!0):g.equals("OBJ")?(g="Obj",F=!0):g.equals("JVXL")?g="ISOSURFACE":g.equals("XJVXL")?g="ISOSURFACE":g.equals("JMOL")?g="ZIPALL":g.equals("HIS")&&(g="HISTORY"),g.equals("COORD")||g.equals("COORDS")))g=null!=v&&0<=v.indexOf(".")?v.substring(v.lastIndexOf(".")+1).toUpperCase():"XYZ";null!=e&&(JV.FileManager.isJmolType(g)||this.invArg(),g.equals("PNG")&&(g="PNGJ"));!t&&(!F&&!JU.PT.isOneOf(g,";SCENE;JMOL;ZIP;ZIPALL;SPT;HISTORY;MO;NBO;ISOSURFACE;MESH;PMESH;PMB;ISOMESHBIN;ISOMESH;VAR;FILE;FUNCTION;CFI;CIF;CIFP1;CML;JSON;XYZ;XYZRN;XYZVIB;MENU;MOL;MOL67;PDB;PGRP;PQR;PWMAT;PWSLAB;QUAT;RAMA;SDF;V2000;V3000;QCJSON;XSF;INLINE;"))&&
c.errorStr2(54,"COORDS|FILE|FUNCTIONS|HISTORY|IMAGE|INLINE|ISOSURFACE|JMOL|MENU|MO|NBO|POINTGROUP|QUATERNION [w,x,y,z] [derivative]|RAMACHANDRAN|SPT|STATE|VAR x|ZIP|ZIPALL|CLIPBOARD","CIF|CIFP1|CML|CFI|GIF|GIFT|JPG|JPG64|JMOL|JVXL|MESH|MOL|PDB|PMESH|PNG|PNGJ|PNGT|PPM|PQR|PWMAT|PWSLAB|SDF|CD|JSON|QCJSON|V2000|V3000|SPT|XJVXL|XSF|XYZ|XYZRN|XYZVIB|ZIP"+k.toUpperCase().$replace(";","|"));if(this.chk)return"";var b=Array(1),A,f=this.vwr.getBoolean(603979934);if(F){f&&JU.Logger.startTimer("export");d=new java.util.Hashtable;
d.put("type",g);null!=v&&d.put("fileName",v);(m||null!=v)&&d.put("fullPath",b);d.put("width",Integer.$valueOf(w));d.put("height",Integer.$valueOf(H));try{l=this.vwr.generateOutputForExport(d)}catch(K){if(R(K,Exception))return l=K.toString();throw K;}if(null==l||0==l.length)return"";if(n)return l;if(!g.equals("Povray")&&!g.equals("Idtf")||null==b[0])return this.writeMsg(l);d=g.equals("Idtf")?".tex":".ini";v=b[0]+d;A=new java.util.Hashtable;A.put("fileName",v);A.put("type",d);A.put("text",l);A.put("fullPath",
b);d=this.vwr.processWriteOrCapture(A);g.equals("Idtf")&&(l=l.substring(0,l.indexOf("\\begin{comment}")));l="Created "+b[0]+":\n\n"+l;f&&this.showString(JU.Logger.getTimerMsg("export",0));null!=d&&((g=!d.startsWith("OK"))&&c.evalError(d,null),c.report(l,g));return""}F=null;k=!1;if(null==l){l=g.intern();if("MENU"===l)l=this.vwr.getMenu("");else if("PGRP"===l)l=this.vwr.ms.getPointGroupAsString(this.vwr.bsA(),null,0,1,null,null,B.equals("draw")?"":null);else if("PDB"===l||"PQR"===l)n?l=this.vwr.getPdbAtomData(null,
null,"PQR"===l,z):(k=!0,g="PDB_"+l+"-coord "+z);else if("FILE"===l)"?".equals(v)&&(v="?Jmol."+this.vwr.getP("_fileType")),n?l=this.e.getCurrentModelFileAsString(null):k=!0;else if(JU.PT.isOneOf(l,";CIF;CIFP1;SDF;MOL;MOL67;V2000;V3000;CD;JSON;XYZ;XYZRN;XYZVIB;CML;QCJSON;PWMAT;PWSLAB;XSF;")){a=this.vwr.bsA();this.vwr.setErrorMessage(null," ("+a.cardinality()+" atoms)");l=this.vwr.getModelExtract(a,z,!1,l);d=this.vwr.getErrorMessageUn();this.vwr.setErrorMessage(null,null);if(0<=this.vwr.am.cmi&&!a.equals(A=
this.vwr.getModelUndeletedAtomsBitSet(this.vwr.am.cmi)))d+="\nNote! Selected atom set "+a+" is not the same as the current model "+A;l.startsWith("ERROR:")&&(F=l)}else if("CFI"===l)l=this.vwr.getModelFileData("selected","cfi",!1);else if("FUNCTION"===l)l=this.vwr.getFunctionCalls(null),g="TXT";else if("VAR"===l)null==u&&(u=c.getParameter(JS.SV.sValue(this.tokenAt(m?2:1,a)),1073742190,!0)),a=null,15==u.tok?(a=new JU.Lst,a.addLast(u.value.data)):6==u.tok&&(a=null==v?new JU.Lst:this.prepareBinaryOutput(u)),
null==a?(l=u.asString(),g="TXT"):null!=v&&(A=new java.util.Hashtable,A.put("data",a),null==(F=l=this.vwr.createZip(v,1==a.size()||v.endsWith(".png")||v.endsWith(".pngj")?"BINARY":"ZIPDATA",A))&&c.evalError("#CANCELED#",null));else if("SPT"===l)if(z)A=this.vwr.ms.getTaintedAtoms(2),this.vwr.setAtomCoordsRelative(JU.P3.new3(0,0,0),null),l=this.vwr.getStateInfo(),this.vwr.ms.setTaintedAtoms(A,2);else{if(l=this.vwr.getStateInfo(),null!=h||null!=j)l=JV.FileManager.setScriptFileReferences(l,h,j,null)}else"ZIP"===
l||"ZIPALL"===l?null!=v&&(A=new java.util.Hashtable,null!=e&&A.put("data",e),null==(F=l=this.vwr.createZip(v,g,A))&&c.evalError("#CANCELED#",null)):"HISTORY"===l?(l=this.vwr.getSetHistory(2147483647),g="SPT"):"MO"===l||"NBO"===l?(l=this.getMoJvxl(2147483647,"NBO"===l),g="XJVXL"):"PMESH"===l||"PMB"===l?(null==(l=this.getIsosurfaceJvxl(29,l))&&this.error(31),g="XJVXL"):"ISOMESH"===l?(null==(l=this.getIsosurfaceJvxl(24,l))&&this.error(31),g="PMESH"):"ISOMESHBIN"===l?(null==(F=this.getIsosurfaceJvxl(24,
"ISOMESHBIN"))&&this.error(31),g="PMB"):"ISOSURFACE"===l||"MESH"===l?(null==(l=this.getIsosurfaceJvxl(q?25:24,l))&&this.error(31),g=0<=l.indexOf("<?xml")?"XJVXL":"JVXL",n||this.showString(this.getShapeProperty(q?25:24,"jvxlFileInfo"))):(m&&(n&&null==v)&&(n=!1,v="\u0001"),null==r&&0>G&&(G=-1));null==l&&(l="")}if(!m)return l;if(n)return c.showStringPrint(l,!0),"";if(null!=F&&"string"==typeof F)return this.writeMsg(F);if(k)return this.writeMsg(this.vwr.writeFileData(v,g,0,null));if(g.equals("SCENE"))F=
r;else if(null==F&&(!t||null!=v))F=l;f&&JU.Logger.startTimer("write");t&&(c.refresh(!1),0>w&&(w=D?250:this.vwr.getScreenWidth()),0>H&&(H=D?250:this.vwr.getScreenHeight()));A=new java.util.Hashtable;null!=v&&A.put("fileName",v);A.put("backgroundColor",Integer.$valueOf(this.vwr.getBackgroundArgb()));A.put("type",g);if(D){A.put("is2D",Boolean.TRUE);var N,c="smiles could not be generated";try{if(N=this.vwr.getOpenSmiles(null),0<N.length){var I=this.vwr.setLoadFormat(!0,"_"+N,"2",!1),I=I+("?width="+w+
"&height="+H+"&format="+g.toLowerCase());this.showString(I);c=this.vwr.fm.getFileAsBytes(I,null)}}catch(L){if(!R(L,Exception))throw L;}if("string"==typeof c)return this.showString(c),null;F=c}"string"==typeof F&&-2147483648==G?A.put("text",F):O(F,Array)&&A.put("bytes",F);null!=e&&A.put("scripts",e);null!=E&&A.put("bsFrames",E);A.put("fullPath",b);A.put("quality",Integer.$valueOf(G));A.put("width",Integer.$valueOf(w));A.put("height",Integer.$valueOf(H));A.put("nVibes",Integer.$valueOf(y));c=this.vwr.processWriteOrCapture(A);
null==c&&(c="canceled");t&&c.startsWith("OK")&&(c+="; width="+w+"; height="+H);f&&this.showString(JU.Logger.getTimerMsg("write",0));return this.writeMsg(c+(null==d?"":d))},"~A");p(k,"prepareBinaryOutput",function(a){var c=a.getMap();if(null==c||!c.containsKey("$_BINARY_$"))return null;a=new JU.Lst;for(var b,c=c.entrySet().iterator();c.hasNext()&&((b=c.next())||1);){var f=b.getKey();if(!f.equals("$_BINARY_$")){var e=b.getValue(),d=15==e.tok?e.value.data:null;null==d&&(e=e.asString(),d=e.startsWith(";base64,")?
JU.Base64.decodeBase64(e):e.getBytes());if(f.equals("_DATA_")){a=new JU.Lst;a.addLast(d);break}else f.equals("_IMAGE_")?(a.add(0,f),a.add(1,null),a.add(2,d)):(a.addLast(f),a.addLast(null),a.addLast(d))}}return a},"JS.SV");p(k,"writeMsg",function(a){if(this.chk||null==a)return"";var c=!a.startsWith("OK");c&&(this.e.evalError(a,null),alert(a));this.e.report(a,c);return a},"~S");p(k,"show",function(){var a=this.e,c=null,b=this.paramAsStr(1),f=null,e=0;3<this.slen&&268441088==this.tokAt(this.slen-3)&&
268439040==this.tokAt(this.slen-2)?(f="!/"+this.paramAsStr(this.slen-1),this.slen-=3,e=3):2<this.slen&&268441088==this.tokAt(this.slen-2)?(f="/"+this.paramAsStr(this.slen-1),this.slen-=2,e=2):0==(f=this.paramAsStr(this.slen-1)).lastIndexOf("/")?(this.slen--,e=1):f=null;var d=null,h=null,j=2,g=this.getToken(1),h=O(g,"JS.SV")&&1073741824!=g.tok?0:g.tok;4==h&&(g=JS.T.getTokenFromName(b.toLowerCase()),null!=g&&(h=g.tok));1296041985!=h&&(1073742158!=h&&1715472409!=h&&1228935687!=h)&&this.checkLength(-3);
2==this.slen&&0<=b.indexOf("?")&&(d=this.vwr.getAllSettings(b.substring(0,b.indexOf("?"))),h=-1);switch(h){case 0:this.chk||(d=a.theToken.escape());break;case 603984065:this.chk||(d=this.vwr.stm.getUndoInfo());break;case 1073741925:a.checkLength23();j=this.st.length;this.chk||(d=this.vwr.getModelInfo("domains"),d=O(d,"JS.SV")?this.vwr.getAnnotationInfo(d,a.optParameterAsString(2),1073741925):"domain information has not been loaded");break;case 1715472409:d=this.plot(this.st);j=this.st.length;break;
case 1073742189:a.checkLength23();j=this.st.length;this.chk||(d=this.vwr.getModelInfo("validation"),d=O(d,"JS.SV")?this.vwr.getAnnotationInfo(d,a.optParameterAsString(2),1073742189):"validation information has not been loaded");break;case 134221829:this.chk||(d=JU.Escape.e(this.vwr.fm.cacheList()));break;case 1111490587:a.checkLength23();j=this.st.length;this.chk||(d=this.vwr.getModelInfo("dssr"),d=null==d?"no DSSR information has been read":2<j?JS.SV.getVariable(this.vwr.extractProperty(d,this.stringParameter(2),
-1)).asString():""+JS.SV.getVariable(d).asString());break;case 1073741915:h=2;3==this.slen?h=K(this.floatParameter((j=3)-1)):this.checkLength(2+e);this.chk||(d=this.vwr.calculateStructures(null,!0,!1,h));break;case 545259572:this.checkLength(2+e);this.chk||(d=this.vwr.fm.getPathForAllFiles());break;case 1275203608:this.chk||(g=Array(2),this.vwr.shm.getShapePropertyData(21,"allInfo",g),d=JS.SV.getVariable(g[1]).asString());break;case 1073742038:this.chk||this.vwr.getNMRPredict(a.optParameterAsString(2));
return;case 603983903:!this.chk&&3==this.slen&&(d=""+this.vwr.getModelkitPropertySafely(a.stringParameter(2)),j=3);break;case 1275068433:case 1073741978:case 1073741929:case 1073741879:case 134218757:this.checkLength((1073741879==h||134218757==h&&1073742335==this.tokAt(2)?j=3:2)+e);if(this.chk)return;var m=a.optParameterAsString(2);1073741879==h&&("mf".equals(m)&&(m="formula"),"formula".equals(m)&&(d=this.vwr.getModelInfo("formula"),null!=d&&(d=JU.PT.rep(d," ",""))));if(null==d){try{switch(h){case 1275068433:d=
this.vwr.getInchi(this.vwr.bsA(),null,null);null==d&&(d="?");break;case 1073741978:d=this.vwr.getInchi(this.vwr.bsA(),null,"key");break;case 134218757:m.equalsIgnoreCase("true")?(d=this.vwr.getBioSmiles(null),f=null):null!=f&&(d=this.vwr.getSmilesOpt(null,-1,-1,1,f+"///"),f=null);break;default:d=this.vwr.ms.getModelDataBaseName(this.vwr.bsA()),d=null!=d&&(d.startsWith("$")||d.startsWith(":"))?d.substring(1):null}if(null==d){var n=JU.Logger.getLogLevel();JU.Logger.setLogLevel(4);d=134218757==h?this.vwr.getSmiles(null):
this.vwr.getOpenSmiles(null);JU.Logger.setLogLevel(n)}}catch(q){if(R(q,Exception))d=q.getMessage(),null==d&&(d=""),q.printStackTrace();else throw q;}switch(h){case 1073741929:if(0<d.length){this.vwr.fm.loadImage(this.vwr.setLoadFormat(!1,"_"+d,"2",!1),"\u0001"+d,!1);return}d="Could not show drawing -- Either insufficient atoms are selected or the model is a PDB file.";break;case 1073741879:j=3,0<d.length?(d=this.vwr.getChemicalInfo(d,m,this.vwr.bsA()),0<=d.indexOf("FileNotFound")&&(d="?")):d="Could not show name -- Either insufficient atoms are selected or the model is a PDB file."}}break;
case 134217764:if(n=a.optParameterAsString(2),g=this.vwr.getOperativeSymmetry(),(m=n.toLowerCase().startsWith("diagram"))||n.toLowerCase().startsWith("table")){if(this.chk)break;n=JU.PT.trim(n.substring(m?7:5).trim(),'"');if(0==n.length){if(null==g){d="Include a space group name or number to view its diagram";break}n=g.getIntTableNumber();if(null==n||n.equals("0")){d="Can't display a table; don't have an ITA number.";break}}d=JU.PT.parseInt(n);if(-2147483648==d){null==g&&this.vwr.getSymStatic();g=
this.vwr.getSymTemp().getSpaceGroupInfo(this.vwr.ms,JU.PT.rep(n,"''",'"'),-1,!0,null);if(null==g){d="Could not find space group "+n;break}d=g.get("spaceGroupInfo").get("ita").intValue()}d=j=JV.JC.resolveDataBase(m?"itadiagram":"itatable",JU.PT.formatS(""+d,3,0,!1,!0),null);this.vwr.showUrl(j);j=this.slen;break}case 1296041985:d="";g=null;if(2==(j=this.slen)){if(this.chk)break;g=this.vwr.getSymTemp().getSpaceGroupInfo(this.vwr.ms,null,-1,!1,null)}else if(134217764==h){n=this.paramAsStr(2);j=3;if(this.chk)break;
n.startsWith("list/")&&(f=n.substring(4),n="list");g=this.vwr.getSymTemp().getSpaceGroupInfo(this.vwr.ms,JU.PT.rep(n,"''",'"'),-1,!1,null)}if(null!=g){d=(134217764==h?""+g.get("spaceGroupInfo")+g.get("spaceGroupNote"):"")+(g.containsKey("symmetryInfo")?g.get("symmetryInfo"):"");break}var h=2==this.tokAt(2)?this.intParameter(2):0,n=4==this.tokAt(2)||12==this.tokAt(2)?this.paramAsStr(2):null,g=m=null,k=-1;if(3<this.slen&&4!=this.tokAt(3)){j=E(-1,[null,this.vwr.getFrameAtoms()]);m=a.centerParameter(2+
(0==h?0:1),j);if(null!=j[0]&&j[0].isEmpty()){j=this.slen;break}j[0]=null;g=a.centerParameter(++a.iToken,j);if(null!=j[0]&&j[0].isEmpty()){j=this.slen;break}0==h&&2==this.tokAt(a.iToken+1)&&(k=a.getToken(++a.iToken).intValue)}var l=1<a.iToken&&4==this.tokAt(a.iToken+1)?this.stringParameter(++a.iToken):null;this.checkLength((j=++a.iToken)+e);this.chk||(d=this.vwr.getSymmetryInfo(this.vwr.getAllAtoms().nextSetBit(0),n,h,null,m,g,0,l,0,k,0,null),d=null==d?"":O(d,"java.util.Map")?JS.SV.getVariable(d).asString():
d.toString());break;case 1648363544:h=null;2<this.slen&&(j=this.slen,h=J.c.VDW.getVdwType(this.paramAsStr(2)),null==h&&this.invArg());this.chk||(d=this.vwr.getDefaultVdwNameOrData(0,h,null));break;case 134320141:a.checkLength23();j=this.slen;h=a.optParameterAsString(2);if(null==f&&0<=(m=h.indexOf("/")))f=h.substring(m+1),h=h.substring(0,m);this.chk||(d=this.vwr.getFunctionCalls(h));break;case 36867:this.checkLength(2+e);this.chk||(d=this.vwr.getAllSettings(null));break;case 1073742166:d=this.vwr.getFrameTitle();
break;case 1073742184:2==this.slen?this.chk||this.vwr.showUrl(a.getFullPathName(!1)):(h=this.paramAsStr(2),this.chk||this.vwr.showUrl(h));return;case 1765808134:b="defaultColorScheme";break;case 1610612740:b="scaleAngstromsPerInch";break;case 134221850:case 4138:if(this.chk)return;0>this.vwr.am.cmi&&a.errorStr(30,"show "+a.theToken.value);d=this.plot(this.st);j=this.slen;break;case 14:case 1112152078:this.chk||(d=this.getContext(!1));break;case 1073741888:h=a.optParameterAsString(2);0<h.length&&(j=
3);this.chk||(c=this.vwr.cm.getColorSchemeList(h));break;case 1073742192:this.chk||(d=this.vwr.getAtomDefs(this.vwr.definedAtomSets)+this.vwr.g.getVariableList()+this.getContext(!0));break;case 536870926:this.chk||(d=this.vwr.getTrajectoryState());break;case 553648144:c=""+JS.ScriptEval.commandHistoryLevelMax;break;case 553648148:c=""+JU.Logger.getLogLevel();break;case 603979825:c=""+this.vwr.getBoolean(603979825);break;case 553648178:d="set strandCountForStrands "+this.vwr.getStrandCount(12)+"; set strandCountForMeshRibbon "+
this.vwr.getStrandCount(13);break;case 536875070:d=this.vwr.showTimeout(2==(j=this.slen)?null:this.paramAsStr(2));break;case 536870918:c=JU.Escape.eP(this.vwr.getDefaultLattice());break;case 4126:this.chk||(d=this.vwr.getMinimizationInfo());break;case 1611272194:switch(this.vwr.g.axesMode){case 603979808:d="set axesUnitcell";break;case 603979804:d="set axesMolecular";break;default:d="set axesWindow"}break;case 1610612737:d="set bondMode "+(this.vwr.getBoolean(603979812)?"OR":"AND");break;case 1649022989:this.chk||
(d="set strandCountForStrands "+this.vwr.getStrandCount(12)+"; set strandCountForMeshRibbon "+this.vwr.getStrandCount(13));break;case 1613238294:d="set hbondsBackbone "+this.vwr.getBoolean(603979852)+";set hbondsSolid "+this.vwr.getBoolean(603979854);break;case 1611141175:this.chk||(d=this.vwr.getSpinState());break;case 1611141176:d="set ssbondsBackbone "+this.vwr.getBoolean(603979952);break;case 1610625028:case 1611141172:d="selectionHalos "+(this.vwr.getSelectionHalosEnabled()?"ON":"OFF");break;
case 1612709894:d="set selectHetero "+this.vwr.getBoolean(1612709894);break;case 1073741828:d=JU.Escape.eAP(this.vwr.getAdditionalHydrogens(null,null,768));break;case 1612709900:d="set selectHydrogens "+this.vwr.getBoolean(1612709900);break;case 553648130:case 553648138:case 536870924:case 553648176:case 553648172:case 1073741995:this.chk||(d=this.vwr.getLightingState());break;case 1073742136:case 4146:this.chk||(d=this.vwr.stm.listSavedStates());break;case 1814695966:this.chk||(d=3==(j=this.slen)?
this.vwr.stm.getSavedUnitCell(this.paramAsStr(2)):this.vwr.getUnitCellInfoText());break;case 1073742329:if(2==(j=this.slen)){this.chk||(d=this.vwr.getCoordinateState(this.vwr.bsA()));break}h=this.paramAsStr(2);this.chk||(d=this.vwr.stm.getSavedCoordinates(h));break;case 1073742158:!this.chk&&(null==a.outputBuffer&&null==f)&&this.vwr.sm.clearConsole();if(2==(j=this.slen)){this.chk||(d=this.vwr.getStateInfo());break}if(null!=f&&3==this.slen){this.chk||(d=this.vwr.getStateInfo());break}else if(1228935687==
this.tokAt(2)&&4==(j=this.slen)){this.chk||(d=this.vwr.fm.getEmbeddedFileState(this.paramAsStr(3),!0,"state.spt"));break}j=3;h=this.paramAsStr(2);this.chk||(d=this.vwr.stm.getSavedState(h));break;case 1639976963:if(2==(j=this.slen)){this.chk||(d=this.vwr.ms.getProteinStructureState(this.vwr.bsA(),134222350));break}h=this.paramAsStr(2);this.chk||(d=this.vwr.stm.getSavedStructure(h));break;case 134221834:m=3==(j=this.slen)?this.paramAsStr(2):null;this.chk||(n=this.vwr.getDataObj(m,null,-2),m=(h=null!=
m&&"types".equals(m.toLowerCase()))||"*".equals(m),null==n?d="no data":O(n,"JU.Lst")?n=n.toArray(Array(n.size())):m||(d=n,d=JU.Escape.encapsulateData(d[0],d[1],d[3].intValue())),null==d&&(d=n,h&&(d[1]=d[1].$replace("\n",",")),d=JU.Escape.e(d)));break;case 1073742330:j=3;d=a.setObjectProperty();break;case 1812599299:this.chk||(d=this.vwr.ms.getBoundBoxCommand(!0));break;case 12289:this.chk||(d="center "+JU.Escape.eP(this.vwr.tm.fixedRotationCenter));break;case 135176:this.chk||(d=this.getShapeProperty(22,
"command"));break;case 1228935687:if(2==this.slen){this.chk||(null==f&&this.vwr.sm.clearConsole(),d=this.e.getCurrentModelFileAsString(null));null==d&&(d="<unavailable>");break}j=3;c=this.paramAsStr(2);this.chk||(null==f&&this.vwr.sm.clearConsole(),d=this.vwr.getFileAsString3(c,!0,null));break;case 4115:d=1073742327==this.tokAt(2)&&0<(j=3)?this.vwr.getModelFileInfoAll():this.vwr.getModelFileInfo();break;case 1610616855:h=2==(j=this.slen)?2147483647:this.intParameter(2);1>h&&this.invArg();this.chk||
(this.vwr.sm.clearConsole(),0==a.scriptLevel&&this.vwr.removeCommand(),d=this.vwr.getSetHistory(h));break;case 135180:this.chk||(d=this.getShapeProperty(24,"jvxlDataXml"));break;case 1073877011:case 1073877010:a.optParameterAsString(2).equalsIgnoreCase("list")?(this.e.sm.loadShape(27),d=this.chk?"":this.getShapeProperty(27,"list -1"),j=3):(n=2==(j=this.slen)?-2147483648:this.intParameter(2),this.chk||(d=this.getMoJvxl(n,1073877011==h)));break;case 1094717454:this.chk||(d=this.vwr.ms.getModelInfoAsString());
break;case 537006096:this.chk||(d=this.vwr.getMeasurementInfoAsString());break;case 1073741864:j=3;!this.chk&&this.slen==j&&(d=this.paramAsStr(2),d=this.vwr.getOrientation(JS.T.getTokFromName(d.equals("box")?"volume":d.equals("rotation")?"best":d),"best",null,null).toString());break;case 1073742132:h=this.tokAt(2),0==h?h=1073742132:j=3;case 1073742178:case 4129:this.chk||(d=this.vwr.getOrientation(h,null,null,null).toString());break;case 1073742077:j=2;if(3<this.slen)break;switch(h=this.tokAt(2)){case 1073742178:case 1073742132:case 4129:case 0:this.chk||
(d=this.vwr.getOrientation(h,null,null,null).toString());break;default:h=a.optParameterAsString(2),d=this.vwr.getOrientation(1073742034,h,null,null).toString()}j=this.slen;break;case 1073742088:this.chk||(d=this.vwr.ms.getPDBHeader(this.vwr.am.cmi));break;case 1275068447:h=a.optParameterAsString(2);0==h.length&&(h=null);j=this.slen;this.chk||(d=this.vwr.ms.getPointGroupAsString(this.vwr.bsA(),"show:"+h,0,0,null,null,null));break;case 1088421903:this.chk||(d=this.vwr.ms.getSymmetryInfoAsString());
break;case 1073742176:this.chk||(d="transform:\n"+this.vwr.tm.matrixRotate.toString());break;case 4168:d="zoom "+(this.vwr.tm.zoomEnabled?""+this.vwr.tm.getZoomSetting():"off");break;case 1611272202:d=this.vwr.getShowFrank()?"frank ON":"frank OFF";break;case 1665140738:b="solventProbeRadius";break;case 1086324744:if(3==(j=this.slen)&&1073742334==this.tokAt(2))h=1086324743;case 1073741863:case 1086326788:case 1073742120:case 1113589787:case 1086324742:case 1153433601:case 1073741982:this.chk||(d=this.vwr.getChimeInfo(h));
break;case 537022465:case 1610612738:case 20482:case 1612709912:c="?";break;case 1073742030:h=2==(j=this.slen)?null:this.paramAsStr(2);this.chk||(d=this.vwr.getBindingInfo(h));break;case 1073742015:this.chk||(c=this.vwr.getMenu(""));break;case 1073741824:b.equalsIgnoreCase("fileHeader")&&(this.chk||(d=this.vwr.ms.getPDBHeader(this.vwr.am.cmi)));break;case 1073741992:case 36868:b=this.paramAsStr(j++),n=a.getParameter(b,1073742190,!0),this.chk||(d=1073741992==h?n.toJSON():n.escape())}this.checkLength(j+
e);this.chk||(null!=d?this.showString(this.filterShow(d,f)):null!=c?this.showString(b+" = "+c):null!=b&&(0<=b.indexOf(" ")?this.showString(b):this.showString(b+" = "+a.getParameter(b,1073742190,!0).escape())))});p(k,"filterShow",function(a,c){if(null==c)return a;var b=c.startsWith("!/");c=c.substring(b?2:1).toLowerCase();for(var f=JU.PT.split(a,"\n"),e=new JU.SB,d=0;d<f.length;d++)0>f[d].toLowerCase().indexOf(c)==b&&e.append(f[d]).appendC("\n");return e.toString()},"~S,~S");p(k,"stereo",function(){for(var a=
J.c.STER.DOUBLE,c=-5,b=!1,f=null,e=0,d=1;d<this.slen;++d)if(this.e.isColorParam(d))1<e&&this.e.bad(),0==e&&(f=P(2,0)),b||(c=3),f[e]=this.e.getArgbParam(d),0==e++&&(f[1]=~f[0]),d=this.e.iToken;else switch(this.getToken(d).tok){case 1073742335:this.e.checkLast(this.e.iToken=1);this.e.iToken=1;break;case 1073742334:this.e.checkLast(this.e.iToken=1);a=J.c.STER.NONE;break;case 2:case 3:c=this.floatParameter(d);b=!0;break;case 1073741824:if(b||(c=3),a=J.c.STER.getStereoMode(this.paramAsStr(d)),null!=a)break;
default:this.invArg()}this.chk||this.vwr.setStereoMode(f,a,c)});p(k,"struts",function(){var a=this.e,c=1073742072==this.tokAt(1)||1073742335==this.tokAt(1)||1==this.slen,b=a.getMadParameter();if(2147483647==b)return!1;c&&(b=Math.round(2E3*this.vwr.getFloat(570425406)));this.setShapeProperty(1,"type",Integer.$valueOf(32768));a.setShapeSizeBs(1,b,null);this.setShapeProperty(1,"type",Integer.$valueOf(1023));return!0});p(k,"unitcell",function(a,c){var b=this.e,f=2147483647,e=2147483647,d=null,h=b.tickParamAsStr(a,
!0,!1,!1);a=b.iToken;var j=null,g=null,m=null,n=null,q=e=!1,k=this.chk?null:this.vwr.getCurrentUnitCell(),l=this.tokAt(++a);switch(l){case 1073742333:this.chk||this.vwr.ms.clearUnitCell(this.vwr.am.cmi);return;case 4142:case 4141:q=!0;d=JU.P4.new4(0,0,0,-1);b.iToken++;break;case 2097180:e=b.hklParameter(a+1,null,!1);l=b.getPointOrPlane(a+1,7);a=b.iToken;var p=NaN;this.isFloatParameter(a+1)&&(p=this.floatParameter(++a),268441090==this.tokAt(a+1)&&(p=-p/100,a++));var x=NaN,B=!1;this.isFloatParameter(a+
1)&&(x=this.floatParameter(++a),268441090==this.tokAt(a+1)&&(B=!0,a++));var s=1073742172==this.tokAt(a+1);s&&a++;b.iToken=a;if(this.chk)break;O(l,"JU.P3")?l=JU.P4.new4(l.x,l.y,l.z,0):Float.isNaN(x)&&(x=l.w);var g=this.getUVBoxFromHKL(k,l,e),n=new JU.P3,D=new JU.V3;JU.Measure.getPlaneProjection(new JU.P3,e,n,D);0<p?(g[3].normalize(),g[3].scale(p)):0>p&&g[3].scale(-p);!Float.isNaN(x)&&0!=x&&(B&&(x=x/100*g[3].length()),g[0].scaleAdd2(x,D,g[0]));s&&g[0].scaleAdd2(-g[3].length(),D,g[0]);n="surface"+K(l.x)+
K(l.y)+K(l.z);break;case 536875059:case 1073742163:d=536875059==l?b.getPointOrPlane(++a,19):b.checkHKL(b.getFractionalPoint(++a));a=b.iToken;if(this.chk)break;g=k.getUnitCellVectors();g[1].scale(Math.abs(d.x));g[2].scale(Math.abs(d.y));g[3].scale(Math.abs(d.z));d=null;n="supercell";break;case 1073741938:d=b.getFractionalPoint(++a);a=b.iToken;if(this.chk)break;d=JU.SimpleUnitCell.ptToIJK(b.checkHKL(d),1);break;case 135180:case 1073742330:j=b.objectNameParameter(++a);break;case 1812599299:b.iToken=
a;if(this.chk)break;g=JU.P3.newP(this.vwr.getBoundBoxCenter());d=this.vwr.getBoundBoxCornerVector();g.sub(d);g=E(-1,[g,JU.P3.new3(2*d.x,0,0),JU.P3.new3(0,2*d.y,0),JU.P3.new3(0,0,2*d.z)]);d=null;break;case 1073742176:12!=this.tokAt(++a)&&this.invArg();if(this.chk)break;m=E(-1,[this.getToken(a).value]);break;case 11:case 12:m=this.getToken(a).value;break;case 12289:switch(this.tokAt(++a)){case 12290:case 10:case 1073742325:d=this.vwr.ms.getAtomSetCenter(this.atomExpressionAt(a));a=b.iToken;if(this.chk)break;
this.vwr.toFractional(d,!0);break;default:if(b.isCenterParameter(a)){d=this.centerParameter(a);a=b.iToken;break}this.invArg()}d.x-=0.5;d.y-=0.5;d.z-=0.5;break;case 12290:case 10:case 1073742325:e=this.atomExpressionAt(a).nextSetBit(0);a=b.iToken;this.chk||this.vwr.am.setUnitCellAtomIndex(e);if(0>e)return;break;case 1073742066:if(e=!0,b.isAtomExpression(a+1)){d=b.centerParameter(++a,null);a=b.iToken;if(this.chk)break;this.vwr.toFractional(d,!1);break}case 1073742114:d=b.getFractionalPoint(++a);if(O(d,
"JU.P4"))e&&this.invArg();else{a=b.iToken;if(this.chk)break;d=!e&&555>d.x?JU.SimpleUnitCell.ptToIJK(b.checkHKL(d),1):JU.P4.new4(d.x,d.y,d.z,e?1:0)}break;case 3:case 2:if(111>this.floatParameter(a)){a--;break}f=this.intParameter(a);break;case 4:case 1073741824:p=this.paramAsStr(a).toLowerCase();if(p.equals("rhombohedral")||p.equals("r")){if(null!=k&&0==k.getUnitCellInfoType(7))return;p="2/3a+1/3b+1/3c,-1/3a+1/3b+1/3c,-1/3a-2/3b+1/3c"}else if(p.equals("trigonal")||p.equals("hexagonal")){if(null!=k&&
0==k.getUnitCellInfoType(8))return;p="a-b,b-c,a+b+c"}n=p;if(0<=p.indexOf(",")||this.chk){m=p;break}e=null;this.vwr.ms.setModelCagePts(-1,null,null);m=this.vwr.getModelInfo("unitcell_conventional");l=null!=this.vwr.getModelInfo("isprimitive");if(JU.PT.isOneOf(n,";parent;standard;primitive;")){if(null==m&&l){this.showString("Cannot convert unit cell when file data is primitive and have no lattice information");return}n.equals("primitive")&&4==this.tokAt(a+1)&&(e=this.paramAsStr(++a).toUpperCase())}O(m,
Array)&&(g=m);null==e&&(e=this.vwr.getModelInfo("latticeType"));null!=m&&(this.vwr.ms.setModelCagePts(-1,this.vwr.getV0abc(-1,m),""+m),m=null);if(!n.equals("conventional"))if(this.setShapeProperty(34,"labels",null),p=this.vwr.getModelInfo("unitcell_"+n),null==p){if((p=n.equals("primitive"))||n.equals("reciprocal")){x=this.slen==a+1?1:2==this.tokAt(a+1)?3.141592653589793*this.intParameter(++a):this.floatParameter(++a);n=(null==k?"":k.getSpaceGroupName()+" ")+n;g=null==k?E(-1,[JU.P3.new3(0,0,0),JU.P3.new3(1,
0,0),JU.P3.new3(0,1,0),JU.P3.new3(0,0,1)]):k.getUnitCellVectors();null==e&&(e=this.vwr.getSymmetryInfo(this.vwr.getFrameAtoms().nextSetBit(0),null,0,null,null,null,1073741994,null,0,-1,0,null));null==k&&(k=this.vwr.getSymTemp());l||k.toFromPrimitive(!0,0==e.length?"P":e.charAt(0),g,this.vwr.getCurrentModelAuxInfo().get("primitiveToCrystal"));p||JU.SimpleUnitCell.getReciprocal(g,g,x);break}}else n=p,0<=p.indexOf(",")&&(m=p);break;default:e=Array(1),this.getUnitCellParameter(a,e)?g=e[0]:m=e[0],null==
m&&null==g?this.slen>a+1?(d=b.getFractionalPoint(a),a=b.iToken):a--:null!=m?(!this.chk&&c&&(null==k?this.vwr.getModelkit(!1).cmdAssignSpaceGroup(null,"P1",m,!1,!1,"unitcell"):k.fixUnitCell(m)&&b.invArgStr("Unit cell is incompatible with current space group")),a=b.iToken):null!=g&&(a=b.iToken)}e=b.getSetAxesTypeMad10(++a);b.checkLast(b.iToken);if(!(this.chk||2147483647==e)){2147483647==e&&this.vwr.am.setUnitCellAtomIndex(-1);null==g&&null!=m&&(g=this.vwr.getV0abc(-1,m));if(2147483647!=f)null!=k&&k.setOffset(f);
else if(null!=j)this.vwr.setCurrentCage(j);else if(q||null!=g)if(q=c||null==k?this.vwr.getModelkit(!1).transformAtomsToUnitCell(k,g,n):!0){if(c&&null!=k){this.vwr.ms.setSpaceGroup(this.vwr.am.cmi,k.getUnitCell(g,!1,null),null);return}this.vwr.ms.setModelCagePts(-1,g,n);null==k&&this.vwr.setNewRotationCenter(this.e.getUnitCellCenter())}b.setObjectMad10(33,"unitCell",e);null!=d&&(k=this.vwr.ms.getUnitCell(-2147483648),null!=k&&k.setOffsetPt(d));null!=h&&this.setShapeProperty(33,"tickInfo",h);null!=
n&&this.showString(n+(null==g?"":" "+JU.Escape.e(g)))}},"~N,~B");p(k,"getUVBoxFromHKL",function(a,c,b){var f=K(c.x),e=K(c.y),d=K(c.z);for((0==f&&0==e&&0==d||f!=c.x||e!=c.y||d!=c.z)&&this.invArg();0==f%2&&0==e%2&&0==d%2;)f/=2,e/=2,d/=2;c=a.getUnitCellVectors();for(var h=b.w,j=JU.P4.new4(b.x,b.y,b.z,0),g=Math.max(Math.max(f,e),d),g=JU.Measure.getLatticePoints(a.getLatticeCentering(),g,g,g),m=g.size();0<=--m;)a.toCartesian(g.get(m),!0);for(var g=JU.Measure.getPointsOnPlane(g.toArray(Array(g.size())),
j),j=new JU.P3,m=-179,n=3.4028235E38,k=3.4028235E38,p=a=null,l=m,C=3.4028235E38,x,B,s,D,u=g.size();0<=--u;){var y=g.get(u);x=y.length();s=!1;if(!(0.01>x||null!=a&&(l=Math.abs(JU.Measure.computeTorsion(a,j,b,y,!0)))>-m))if(D=1>l,null==a)a=y,n=x;else{if(x<n-0.01)s=!0,l=C=3.4028235E38;else if(x<k-0.01)C=3.4028235E38;else if(!(x>=k+0.01))continue;s||(B=89<l)&&x<n+0.1&&-0.01<=y.x&&0.01>=y.y&&(3.4028235E38==C||89>C)?(D?(p=null,k=3.4028235E38):(p=a,k=n),a=y,n=x,!s&&l<C&&(C=l)):B&&x<k+0.1&&(p=y,k=x,l<C&&
(C=l))}}null==a&&this.invArg();B=null;if(null==p)for(u=g.size();0<=--u;)y=g.get(u),l=JU.Measure.computeTorsion(a,j,b,y,!0),-89.9>l&&l>m+0.01&&(m=l,B=y);else l=JU.Measure.computeTorsion(a,j,b,p,!0),1<l?(B=a,a=p):B=p;null==B&&this.invArg();c[1]=B;c[2]=a;b=1==((0>f?1:0)+(0>e?1:0)+(0>d?1:0))%2;g=c[3];j=JU.P3.newP(B);m=JU.P3.newP(a);0==f&&0==e?(m.scale(-1),j.scale(-1),c[1]=j,c[2]=m):!(0==f&&0==d)&&(0==e&&0==d)&&(j.scale(-1),m.scale(-1),c[1]=m,c[2]=j);b&&(j=c[1],c[1]=c[2],c[2]=j);g.cross(a,B);g.normalize();
g.scale(h);return c},"J.api.SymmetryInterface,JU.P4,JU.P4");p(k,"modelkit",function(){var a=0,c=this.tokAt(1);switch(c){case 603984065:case 4139:this.chk&&this.e.cmdUndoRedo(603984065==c?4165:4140);return;case 1073742334:if(this.e.$isStateScript&&this.vwr.getModelkit(!1).setProperty("updatekeysfromstate",null),2==this.slen&&null==this.vwr.getModelkitPropertySafely("exists"))return;case 0:case 1073742335:this.chk||this.vwr.setBooleanProperty("modelkitmode",1073742334!=c);if(0==this.tokAt(a+1))return;
a=++this.e.iToken;break;case 4126:0>this.vwr.am.cmi&&this.e.errorStr(30,"MODELKIT MINIMIZE");this.minimize(!0);return;case 528432:case 4145:this.e.cmdRotate(!1,!0);return;case 4098:++this.e.iToken;case 134217764:case 4106:case 12291:case 1275069441:case 4129:case 1073742080:case 12297:case 135176:this.assign(!0);return;case 4130:++this.e.iToken;this.mutate();return}for(var b=this.vwr.getModelkit(!1);0!=(c=this.tokAt(++a));){var f=this.paramAsStr(a).toLowerCase(),e=null;switch(c){case 1073742335:case 1073742334:this.chk||
(this.vwr.setBooleanProperty("modelkitmode",1073742335==c),1073742334==c&&this.vwr.setStringProperty("picking","identify"));continue;case 1610625028:case 12294:f="hidden";e=Boolean.$valueOf(1610625028!=c);break;case 12293:var f="constraint",e="",d=c=null,h=null;switch(this.tokAt(++a)){case 1073742334:case 1073742333:this.chk||this.vwr.setBooleanProperty("dragPicking",!1);break;case 135198:c=this.e.getPoint3f(++a,!0,!0);a=this.e.iToken;d=this.e.getPoint3f(++a,!0,!0);e=null;break;case 134219777:h=this.e.hklParameter(++a,
null,!0);e=null;break;case 134217750:h=this.e.planeParameter(++a,!1);e=null;break;default:this.invArg()}null==e?((null==c||null==d)==(null==h)&&this.invArg(),e=E(-1,[c,d,h])):e=null;a=this.e.iToken;break;case 36867:f=this.paramAsStr(++a);e=0==this.tokAt(++a)?"true":this.paramAsStr(a);break;case 4166:f="vibration";switch(this.tokAt(++a)){case 1073742334:e="off";break;case 1086324754:e="wyckoff";break;default:this.invArg()}break;case 1296041985:switch(this.tokAt(++a)){case 4:case 1073742333:e=this.paramAsStr(a);
break;case 12:e=this.getToken(a).value;break;case 2:e=Integer.$valueOf(this.getToken(a).intValue);break;default:this.e.isCenterParameter(a)?(f="center",e=this.e.centerParameter(a,null),a=this.e.iToken):this.invArg()}break;case 1073742066:if(e=this.paramAsStr(a+1),e.equals("none")){++a;break}case 134217751:case 12289:e=this.e.atomCenterOrCoordinateParameter(++a,null);a=this.e.iToken;break;case 1073742024:e=this.paramAsStr(++a).toLowerCase();this.vwr.isModelKitOption("M",e)||this.invArg();break;case 1814695966:if(this.e.isArrayParameter(a+
1)){this.unitcell(2,!0);return}e=this.paramAsStr(++a).toLowerCase();if(!this.vwr.isModelKitOption("U",e)){this.unitcell(2,!0);return}break;case 1088421903:e=this.paramAsStr(++a).toLowerCase();this.vwr.isModelKitOption("S",e)||this.invArg();break;default:if(this.vwr.isModelKitOption("B",f)){e=Boolean.$valueOf(0==(c=this.tokAt(++a))||1073742335==c);break}if(this.vwr.isModelKitOption("M",f)){e=f;f="mode";break}if(this.vwr.isModelKitOption("U",f)){e=f;f="unitcell";break}this.invArg()}!this.chk&&(null!=
e&&null!=(e=b.setProperty(f,e))&&"hidden"!==f&&!b.isHidden())&&this.vwr.showString("modelkit SET "+f+" "+e.toString(),!1)}});p(k,"assign",function(a){0>this.vwr.am.cmi&&this.invArg();var c=this.vwr.getThisModelAtoms(),b=++this.e.iToken,f=!1,e=this.tokAt(b);135176==e&&(134217764!=this.tokAt(2)&&this.invArg(),f=!0,e=12297);if(12297==e&&(a||this.invArg(),this.e.chk||this.vwr.zap(!1,!1,!1),e=this.tokAt(++b),0==e))return;var d=1153433601==e,h=1677721602==e,j=1275069441==e,g=4106==e,m=12291==e,k=4129==
e,p=134217764==e,t=1073742080==e;(t||p)&&!a&&this.invArg();d||h||g||p||m||k||j||t?b++:(d=!0,e=1153433601);var l=m=-1;a=null;if(h){if(2==this.tokAt(b))m=this.e.intParameter(b);else if(O(this.getToken(b).value,"JM.BondSet"))m=this.getToken(b).value.nextSetBit(0);else switch(a=this.expFor(b,c),m=a.nextSetBit(0),a.cardinality()){case 1:a=this.expFor(++this.e.iToken,c),l=a.nextSetBit(0),0>l&&this.invArg(),a.set(m);case 2:a=this.vwr.ms.getBondsForSelectedAtoms(a,!1);a.isEmpty()?(g=!0,e=4106):m=a.nextSetBit(0);
break;default:this.invArg()}b=++this.e.iToken}else if(t)a=c;else if(!(d&&4==this.tokAt(b)||1275069441==e))if(!p||this.e.isAtomExpression(b)){a=this.expFor(b,c);m=a.nextSetBit(0);if(0>m)return;b=++this.e.iToken}var C=h=null,x=null,B=null,s=null;if(j)switch(this.e.isAtomExpression(b)?(a=this.expFor(++this.e.iToken,c),b=this.e.iToken,h=this.e.optParameterAsString(b+1),h.toLowerCase().equals("packed")&&(t=!0,h="")):h=this.e.optParameterAsString(b),this.e.isPoint3f(this.e.iToken+1)?C=this.getPoint3f(++this.e.iToken,
!0):this.e.isArrayParameter(this.e.iToken+1)&&(s=this.e.getPointArray(this.e.iToken+1,-1,!1)),0==h.length&&(h=null),this.tokAt(this.e.iToken+1)){case 1073742080:t=!0;++this.e.iToken;break;case 1086324754:++this.e.iToken,x=this.paramAsStr(++this.e.iToken),c=x.equalsIgnoreCase("general")?"G":1<x.length||0==x.length?"\x00":x.charAt(0),("a">c&&"A"!=c&&"G"!=c||"z"<c)&&this.invArg(),"packed".equals(this.e.optParameterAsString(this.e.iToken+1))&&(t=!0,++this.e.iToken)}else if(k)this.e.isArrayParameter(b)?
s=this.e.getPointArray(b,-1,!1):C=this.getPoint3f(b,!0);else if(p){h=this.e.optParameterAsString(b);c=this.vwr.getOperativeSymmetry();if(h.equalsIgnoreCase("packed"))null==c&&this.invArg(),h=c.getClegId(),t=!0;else if(0>h.indexOf(":")&&0>h.indexOf(">")&&(0<h.indexOf(",")||0<="rh".indexOf(h)))null==c&&this.invArg(),c=c.getClegId(),h=c.substring(0,c.indexOf(":")+1)+h;1814695966==this.tokAt(this.e.iToken+1)&&(c=Array(1),this.getUnitCellParameter(this.e.iToken+2,c),B=c[0],null==B&&this.invArg());1073742080==
this.tokAt(this.e.iToken+1)&&(t=!0,++this.e.iToken)}else g?0>l&&(a=this.expFor(b,c),l=a.nextSetBit(0),h=this.e.optParameterAsString(++this.e.iToken)):(h=this.e.optParameterAsString(b),d&&(C=++this.e.iToken<this.slen?this.centerParameter(this.e.iToken):null));if(!this.chk)switch(this.vwr.pushState(),e){case 1153433601:this.e.clearDefinedVariableAtomSets();this.vwr.getModelkit(!1).cmdAssignAtom(a,C,h,this.e.fullCommand);break;case 1677721602:this.vwr.getModelkit(!1).cmdAssignBond(m,(h+"-").charAt(0),
this.e.fullCommand);break;case 4106:this.vwr.getModelkit(!1).cmdAssignConnect(m,l,(h+"1").charAt(0),this.e.fullCommand);break;case 1073742080:h=null;case 1275069441:case 1086324754:null==s&&(null!=C?s=E(-1,[C]):null==a&&null==x&&(null==h?this.invArg():x="G"));f=this.vwr.getModelkit(!1).cmdAssignAddAtoms(h+(null!=x?":"+x:""),s,a,t?"packed":"",this.e.fullCommand);this.e.doReport()&&this.e.report(J.i18n.GT.i(J.i18n.GT.$("{0} atoms added"),f),!1);break;case 12291:f=this.vwr.getModelkit(!1).cmdAssignDeleteAtoms(a);
this.e.doReport()&&this.e.report(J.i18n.GT.i(J.i18n.GT.$("{0} atoms deleted"),f),!1);break;case 4129:f=this.vwr.getModelkit(!1).cmdAssignMoveAtoms(a,m,JU.P3.newP(C),s,!0,!1);0<f&&this.vwr.checkCoordinatesChanged(a);this.e.doReport()&&this.e.report(J.i18n.GT.i(J.i18n.GT.$("{0} atoms moved"),f),!1);break;case 134217764:f=this.vwr.getModelkit(!1).cmdAssignSpaceGroup(a,h,B,t,f,this.e.fullCommand),f.endsWith("!")&&this.e.invArgStr(f),this.e.doReport()&&this.e.showString(f)}},"~B");p(k,"getUnitCellParameter",
function(a,c){c[0]=null;if(8==this.tokAt(a))return!1;var b=this.e.iToken;if(4==this.tokAt(a)){var b=this.paramAsStr(a),f=this.vwr.getCurrentUnitCell();null==f&&this.invArg();this.chk||(c[0]=f.getV0abc(b,null));return!0}if(this.e.isArrayParameter(a)){this.e.ignoreError=!0;if(1073742332!=this.tokAt(a+2))try{return c[0]=this.e.floatParameterSet(a,6,6),this.e.ignoreError=!1}catch(e){if(!R(e,Exception))throw e;}try{c[0]=this.e.getPointArray(a,4,!1)}catch(d){if(R(d,Exception))this.e.iToken=b;else throw d;
}this.e.ignoreError=!1}return!0},"~N,~A");p(k,"expFor",function(a,c){var b=JU.BS.copy(this.atomExpressionAt(a));b.and(c);return b},"~N,JU.BS");p(k,"getContext",function(a){for(var c=new JU.SB,b=this.e.thisContext;null!=b;)a?null!=b.vars&&(c.append(this.getScriptID(b)),c.append(JV.StateManager.getVariableList(b.vars,80,!0,!1))):c.append(JS.ScriptError.getErrorLineMessage(b.functionName,b.scriptFileName,this.e.getLinenumber(b),b.pc,JS.ScriptEval.statementAsString(this.vwr,b.statement,-9999,this.e.debugHigh))),
b=b.parentContext;a?null!=this.e.contextVariables&&(c.append(this.getScriptID(null)),c.append(JV.StateManager.getVariableList(this.e.contextVariables,80,!0,!1))):c.append(this.e.getErrorLineMessage2());return c.toString()},"~B");p(k,"getIsosurfaceJvxl",function(a,c){return this.chk?"":this.getShapeProperty(a,"PMESH"===c||"MESH"===c?"jvxlMeshX":"ISOMESH"===c?"pmesh":"ISOMESHBIN"===c||"PMB"===c?"pmeshbin":"jvxlDataXml")},"~N,~S");p(k,"getMoJvxl",function(a,c){var b=c?28:27;this.e.sm.loadShape(b);var f=
this.vwr.am.cmi;0>f&&this.e.errorStr(30,"show/write MO/NBO");var e=this.vwr.ms.getInfo(f,"moData");null==e&&this.error(27);var d=this.getShapeProperty(b,"moNumber");(null==d||0==d.intValue())&&this.setShapeProperty(b,"init",Integer.$valueOf(f));this.setShapeProperty(b,"moData",e);return this.e.sm.getShapePropertyIndex(b,"showMO",a)},"~N,~B");p(k,"getScriptID",function(a){return"\n# "+(null==a?this.e.functionName:"function "+a.functionName)+" (file "+(null==a?this.e.scriptFileName:a.scriptFileName)+
(null==a?"":" context "+a.id)+")\n"},"JS.ScriptContext");p(k,"tokenAt",function(a,c){return a<c.length?c[a]:null},"~N,~A");k.tokAtArray=p(k,"tokAtArray",function(a,c){return a<c.length&&null!=c[a]?c[a].tok:0},"~N,~A");p(k,"getPlotMinMax",function(a,c,b){if(null==a)return 0;switch(b){case 1111490568:case 1111490569:case 1111490570:return c?180:-180;case 1111490565:case 1111490576:return c?360:0;case 1111490574:return c?1:-1}b=c?-1E10:1E10;for(var f=a.length;0<=--f;){var e=a[f];Float.isNaN(e)||c==e>
b&&(b=e)}return b},"~A,~B,~N");p(k,"parseDataArray",function(a,c){a=JU.Parser.fixDataString(a);var b=JU.Parser.markLines(a,"\n"),f=b.length;if(!c){for(var e=JU.AU.newFloat2(f),d=0,h=0;d<f;h=b[d++])h=JU.PT.getTokens(a.substring(h,b[d])),JU.PT.parseFloatArrayData(h,e[d]=S(h.length,0));return e}h=JU.PT.getTokens(a.substring(0,b[0]));if(3!=h.length)return S(0,0,0,0);var j=JU.PT.parseInt(h[0]),g=JU.PT.parseInt(h[1]),k=JU.PT.parseInt(h[2]);if(1>j||1>g||1>k)return S(1,1,1,0);for(var e=JU.AU.newFloat3(j,
g),n=0,p=0,d=1,h=b[0];d<f&&n<j;h=b[d++])h=JU.PT.getTokens(a.substring(h,b[d])),h.length<k||(JU.PT.parseFloatArrayData(h,e[n][p]=S(h.length,0)),++p==g&&(n++,p=0));return n!=j?(System.out.println("Error reading 3D data -- nX = "+j+", but only "+n+" blocks read"),S(1,1,1,0)):e},"~S,~B");p(k,"getBitsetPropertyFloat",function(a,c,b,f,e){c=null==b||1086325010==c||1111490843==c?this.e.getBitsetProperty(a,null,c,null,null,b,null,!1,2147483647,!1):this.vwr.getDataObj(b,a,1);if(null==c||!JU.AU.isAF(c))return null==
a?null:S(a.cardinality(),0);if(!Float.isNaN(f))for(a=0;a<c.length;a++)c[a]<f&&(c[a]=NaN);if(!Float.isNaN(e))for(a=0;a<c.length;a++)c[a]>e&&(c[a]=NaN);return c},"JU.BS,~N,~S,~N,~N");k.labeler=null})})(Clazz,Clazz.getClassName,Clazz.newLongArray,Clazz.doubleToByte,Clazz.doubleToInt,Clazz.doubleToLong,Clazz.declarePackage,Clazz.instanceOf,Clazz.load,Clazz.instantialize,Clazz.decorateAsClass,Clazz.floatToInt,Clazz.floatToLong,Clazz.makeConstructor,Clazz.defineEnumConstant,Clazz.exceptionOf,Clazz.newIntArray,
Clazz.newFloatArray,Clazz.declareType,Clazz.prepareFields,Clazz.superConstructor,Clazz.newByteArray,Clazz.declareInterface,Clazz.newShortArray,Clazz.innerTypeInstance,Clazz.isClassDefined,Clazz.prepareCallback,Clazz.newArray,Clazz.castNullAs,Clazz.floatToShort,Clazz.superCall,Clazz.decorateAsType,Clazz.newBooleanArray,Clazz.newCharArray,Clazz.implementOf,Clazz.newDoubleArray,Clazz.overrideConstructor,Clazz.clone,Clazz.doubleToShort,Clazz.getInheritedLevel,Clazz.getParamsType,Clazz.isAF,Clazz.isAB,
Clazz.isAI,Clazz.isAS,Clazz.isASS,Clazz.isAP,Clazz.isAFloat,Clazz.isAII,Clazz.isAFF,Clazz.isAFFF,Clazz.tryToSearchAndExecute,Clazz.getStackTrace,Clazz.inheritArgs,Clazz.alert,Clazz.defineMethod,Clazz.overrideMethod,Clazz.declareAnonymous,Clazz.cloneFinals);
