Clazz.declarePackage("J.export");
Clazz.load(["J.export.___Exporter", "JU.A4", "$.M4"], "J.export.__CartesianExporter", ["java.util.Hashtable", "JU.M3", "$.P3", "JU.C", "$.Logger"], function(){
var c$ = Clazz.decorateAsClass(function(){
this.viewpoint = null;
this.canCapCylinders = false;
this.noColor = false;
this.sphereMatrix = null;
Clazz.instantialize(this, arguments);}, J["export"], "__CartesianExporter", J["export"].___Exporter);
Clazz.prepareFields (c$, function(){
this.viewpoint =  new JU.A4();
this.sphereMatrix =  new JU.M4();
});
Clazz.makeConstructor(c$, 
function(){
Clazz.superConstructor (this, J["export"].__CartesianExporter, []);
this.exportType = 1;
this.lineWidthMad = 100;
});
Clazz.defineMethod(c$, "getModelCenter", 
function(){
return this.referenceCenter;
});
Clazz.defineMethod(c$, "getCameraPosition", 
function(){
var ptCamera =  new JU.P3();
var pt = JU.P3.new3(Clazz.doubleToInt(this.screenWidth / 2), Clazz.doubleToInt(this.screenHeight / 2), 0);
this.tm.unTransformPoint(pt, ptCamera);
ptCamera.sub(this.center);
this.tempP3.set(Clazz.doubleToInt(this.screenWidth / 2), Clazz.doubleToInt(this.screenHeight / 2), this.cameraDistance * this.scalePixelsPerAngstrom);
this.tm.unTransformPoint(this.tempP3, this.tempP3);
this.tempP3.sub(this.center);
ptCamera.add(this.tempP3);
return this.cameraPosition;
});
Clazz.defineMethod(c$, "setTempPoints", 
function(ptA, ptB, isCartesian){
if (isCartesian) {
this.tempP1.setT(ptA);
this.tempP2.setT(ptB);
} else {
this.tm.unTransformPoint(ptA, this.tempP1);
this.tm.unTransformPoint(ptB, this.tempP2);
}}, "JU.P3,JU.P3,~B");
Clazz.defineMethod(c$, "getCoordinateMap", 
function(vertices, coordMap, bsValid){
var n = 0;
for (var i = 0; i < coordMap.length; i++) {
if (bsValid != null && !bsValid.get(i) || Float.isNaN(vertices[i].x)) {
if (bsValid != null) bsValid.clear(i);
continue;
}coordMap[i] = n++;
}
return n;
}, "~A,~A,JU.BS");
Clazz.defineMethod(c$, "getNormalMap", 
function(normals, nNormals, bsValid, vNormals){
var htNormals =  new java.util.Hashtable();
var normalMap =  Clazz.newIntArray (nNormals, 0);
for (var i = 0; i < nNormals; i++) {
var s;
if (bsValid != null && !bsValid.get(i) || Float.isNaN(normals[i].x)) {
if (bsValid != null) bsValid.clear(i);
continue;
}s = this.getTriad(normals[i]) + "\n";
if (htNormals.containsKey(s)) {
normalMap[i] = htNormals.get(s).intValue();
} else {
normalMap[i] = vNormals.size();
vNormals.addLast(s);
htNormals.put(s, Integer.$valueOf(normalMap[i]));
}}
return normalMap;
}, "~A,~N,JU.BS,JU.Lst");
Clazz.defineMethod(c$, "outputIndices", 
function(indices, map, nPolygons, bsPolygons, faceVertexMax){
var isAll = (bsPolygons == null);
var i0 = (isAll ? nPolygons - 1 : bsPolygons.nextSetBit(0));
for (var i = i0; i >= 0; i = (isAll ? i - 1 : bsPolygons.nextSetBit(i + 1))) this.outputFace(indices[i], map, faceVertexMax);

}, "~A,~A,~N,JU.BS,~N");
Clazz.overrideMethod(c$, "plotText", 
function(x, y, z, colix, text, font3d){
this.gdata.plotText(x, y, z, this.gdata.getColorArgbOrGray(colix), 0, text, font3d, this.export3D);
}, "~N,~N,~N,~N,~S,JU.Font");
Clazz.overrideMethod(c$, "plotImage", 
function(x, y, z, image, bgcolix, width, height){
}, "~N,~N,~N,~O,~N,~N,~N");
Clazz.overrideMethod(c$, "drawAtom", 
function(atom, radius){
if (JU.Logger.debugging) this.outputComment("atom " + atom);
var colix = atom.colixAtom;
this.outputSphere(atom, radius == 0 ? atom.madAtom / 2000 : radius, colix, JU.C.isColixTranslucent(colix));
}, "JM.Atom,~N");
Clazz.overrideMethod(c$, "drawCircle", 
function(x, y, z, diameter, colix, doFill){
this.tempP3.set(x, y, z);
this.tm.unTransformPoint(this.tempP3, this.tempP1);
var radius = this.vwr.tm.unscaleToScreen(z, diameter) / 2;
this.tempP3.set(x, y, z + 1);
this.tm.unTransformPoint(this.tempP3, this.tempP3);
this.outputCircle(this.tempP1, this.tempP3, radius, colix, doFill);
}, "~N,~N,~N,~N,~N,~B");
Clazz.overrideMethod(c$, "drawEllipse", 
function(ptCenter, ptX, ptY, colix, doFill){
this.tempV1.sub2(ptX, ptCenter);
this.tempV2.sub2(ptY, ptCenter);
this.tempV2.cross(this.tempV1, this.tempV2);
this.tempV2.normalize();
this.tempV2.scale(doFill ? 0.002 : 0.005);
this.tempP1.sub2(ptCenter, this.tempV2);
this.tempP2.add2(ptCenter, this.tempV2);
return this.outputCylinder(ptCenter, this.tempP1, this.tempP2, colix, doFill ? 2 : 0, 1.01, ptX, ptY, true);
}, "JU.P3,JU.P3,JU.P3,~N,~B");
Clazz.overrideMethod(c$, "drawPixel", 
function(colix, x, y, z, scale){
this.tempP3.set(x, y, z);
this.tm.unTransformPoint(this.tempP3, this.tempP1);
this.outputSphere(this.tempP1, 0.02 * scale, colix, true);
}, "~N,~N,~N,~N,~N");
Clazz.overrideMethod(c$, "drawTextPixel", 
function(argb, x, y, z){
this.tempP3.set(x, y, z);
this.tm.unTransformPoint(this.tempP3, this.tempP1);
this.outputTextPixel(this.tempP1, argb);
}, "~N,~N,~N,~N");
Clazz.overrideMethod(c$, "fillConeScreen", 
function(colix, endcap, screenDiameter, screenBase, screenTip, isBarb){
this.tm.unTransformPoint(screenBase, this.tempP1);
this.tm.unTransformPoint(screenTip, this.tempP2);
var radius = this.vwr.tm.unscaleToScreen(screenBase.z, screenDiameter) / 2;
if (radius < 0.05) radius = 0.05;
this.outputCone(this.tempP1, this.tempP2, radius, colix);
}, "~N,~N,~N,JU.P3,JU.P3,~B");
Clazz.overrideMethod(c$, "drawCylinder", 
function(ptA, ptB, colix1, colix2, endcaps, mad, bondOrder){
this.setTempPoints(ptA, ptB, bondOrder < 0);
var radius = mad / 2000;
if (JU.Logger.debugging) this.outputComment("bond " + ptA + " " + ptB);
if (colix1 == colix2 || this.noColor) {
this.outputCylinder(null, this.tempP1, this.tempP2, colix1, endcaps, radius, null, null, bondOrder != -1);
} else {
this.tempV2.ave(this.tempP2, this.tempP1);
this.tempP3.setT(this.tempV2);
if (this.solidOnly && endcaps == 0) endcaps = 2;
 else if (this.canCapCylinders && endcaps == 3) endcaps = (this.solidOnly ? 5 : 4);
this.outputCylinder(null, this.tempP3, this.tempP1, colix1, (endcaps == 3 ? 0 : endcaps), radius, null, null, true);
this.outputCylinder(null, this.tempP3, this.tempP2, colix2, (endcaps == 3 ? 0 : endcaps), radius, null, null, true);
if (endcaps == 3) {
this.outputSphere(this.tempP1, radius * 1.01, colix1, bondOrder != -2);
this.outputSphere(this.tempP2, radius * 1.01, colix2, bondOrder != -2);
}}}, "JU.P3,JU.P3,~N,~N,~N,~N,~N");
Clazz.overrideMethod(c$, "fillCylinderScreenMad", 
function(colix, endcaps, mad, screenA, screenB){
var radius = mad / 2000;
this.setTempPoints(screenA, screenB, false);
this.outputCylinder(null, this.tempP1, this.tempP2, colix, endcaps, radius, null, null, true);
}, "~N,~N,~N,JU.P3,JU.P3");
Clazz.overrideMethod(c$, "fillCylinderScreen", 
function(colix, endcaps, screenDiameter, screenA, screenB, ptA, ptB, radius){
if (ptA != null) {
this.drawCylinder(ptA, ptB, colix, colix, endcaps, Math.round(radius * 2000), -1);
return;
}var mad = (screenDiameter < 0 ? -screenDiameter * 10 : Math.round(this.vwr.tm.unscaleToScreen((screenA.z + screenB.z) / 2, screenDiameter) * 1000));
this.fillCylinderScreenMad(colix, endcaps, mad, screenA, screenB);
}, "~N,~N,~N,JU.P3,JU.P3,JU.P3,JU.P3,~N");
Clazz.overrideMethod(c$, "fillEllipsoid", 
function(center, points, colix, x, y, z, diameter, toEllipsoidal, coef, deriv, octantPoints){
this.outputEllipsoid(center, points, colix);
}, "JU.P3,~A,~N,~N,~N,~N,~N,JU.M3,~A,JU.M4,~A");
Clazz.overrideMethod(c$, "fillSphere", 
function(colix, diameter, pt){
this.tm.unTransformPoint(pt, this.tempP1);
this.outputSphere(this.tempP1, this.vwr.tm.unscaleToScreen(pt.z, diameter) / 2, colix, true);
}, "~N,~N,JU.P3");
Clazz.overrideMethod(c$, "fillTriangle", 
function(colix, ptA, ptB, ptC, twoSided){
this.tm.unTransformPoint(ptA, this.tempP1);
this.tm.unTransformPoint(ptB, this.tempP2);
this.tm.unTransformPoint(ptC, this.tempP3);
if (this.solidOnly) {
this.outputSolidPlate(this.tempP1, this.tempP2, this.tempP3, colix);
} else {
this.outputTriangle(this.tempP1, this.tempP2, this.tempP3, colix);
if (twoSided) this.outputTriangle(this.tempP1, this.tempP3, this.tempP2, colix);
}}, "~N,JU.T3,JU.T3,JU.T3,~B");
Clazz.defineMethod(c$, "outputSolidPlate", 
function(tempP1, tempP2, tempP3, colix){
}, "JU.P3,JU.P3,JU.P3,~N");
Clazz.defineMethod(c$, "setSphereMatrix", 
function(center, rx, ry, rz, a, sphereMatrix){
if (a != null) {
var m =  new JU.M3();
m.m00 = rx;
m.m11 = ry;
m.m22 = rz;
var mq =  new JU.M3().setAA(a);
mq.mul(m);
sphereMatrix.setToM3(mq);
} else {
sphereMatrix.setIdentity();
sphereMatrix.m00 = rx;
sphereMatrix.m11 = ry;
sphereMatrix.m22 = rz;
}sphereMatrix.m03 = center.x;
sphereMatrix.m13 = center.y;
sphereMatrix.m23 = center.z;
sphereMatrix.m33 = 1;
}, "JU.T3,~N,~N,~N,JU.A4,JU.M4");
});
;//5.0.1-v7 Mon May 19 12:57:35 CDT 2025
